The accuracy of methods for coding and sampling higher-level taxa for phylogenetic analysis: a simulation study

JJ Wiens - Systematic Biology, 1998 - academic.oup.com
Many phylogenetic analyses, particularly morphological studies, use higher taxa (eg,
genera, families) rather than species as terminal taxa. This general approach requires …

Can incomplete taxa rescue phylogenetic analyses from long-branch attraction?

JJ Wiens - Systematic Biology, 2005 - academic.oup.com
Taxon sampling may be critically important for phylogenetic accuracy because adding taxa
can help to subdivide misleading long branches. Although the idea that added taxa can …

The systematic component of phylogenetic error as a function of taxonomic sampling under parsimony

RW DeBry - Systematic Biology, 2005 - academic.oup.com
The effect of taxonomic sampling on phylogenetic accuracy under parsimony is examined by
simulating nucleotide sequence evolution. Random error is minimized by using very large …

Do macrophylogenies yield stable macroevolutionary inferences? An example from squamate reptiles

PO Title, DL Rabosky - Systematic Biology, 2017 - academic.oup.com
Advances in the generation, retrieval, and analysis of phylogenetic data have enabled
researchers to create phylogenies that contain many thousands of taxa. These …

Impact of errors on cladistic inference: simulation-based comparison between parsimony and three-taxon analysis

V Rineau, RZ i Bagils, M Laurin - Contributions to Zoology, 2018 - brill.com
Simulation-based and experimental studies are crucial to produce factual arguments to
solve theoretical and methodological debates in phylogenetics. However, despite the large …

Increasing the number of discrete character states for continuous characters generates well‐resolved trees that do not reflect phylogeny

J Bardin, I Rouget, MM Yacobucci… - Integrative Zoology, 2014 - Wiley Online Library
Since the introduction of the cladistic method in systematics, continuous characters have
been integrated into analyses but no methods for their treatment have received unanimous …

Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 …

Y Zheng, JJ Wiens - Molecular phylogenetics and evolution, 2016 - Elsevier
Two common approaches for estimating phylogenies in species-rich groups are to:(i)
sample many loci for few species (eg phylogenomic approach), or (ii) sample many species …

Increased taxon sampling greatly reduces phylogenetic error

DJ Zwickl, DM Hillis - Systematic biology, 2002 - academic.oup.com
Several authors have argued recently that extensive taxon sampling has a positive and
important effect on the accuracy of phylogenetic estimates. However, other authors have …

Experimental systematics: sensitivity of cladistic methods to polarization and character ordering schemes

V Rineau, A Grand, R Zaragüeta, M Laurin - Contributions to Zoology, 2015 - brill.com
Phenotypic characters are essential to study the evolution of extant and extinct life forms and
to reconstruct the tree of life. Inside the cladistics theory, parsimony is used by a large …

No link between population isolation and speciation rate in squamate reptiles

S Singhal, GR Colli, MR Grundler… - Proceedings of the …, 2022 - National Acad Sciences
Rates of species formation vary widely across the tree of life and contribute to massive
disparities in species richness among clades. This variation can emerge from differences in …