[HTML][HTML] Quantifying genome-editing outcomes at endogenous loci with SMRT sequencing

A Hendel, EJ Kildebeck, EJ Fine, JT Clark, N Punjya… - Cell reports, 2014 - cell.com
Targeted genome editing with engineered nucleases has transformed the ability to introduce
precise sequence modifications at almost any site within the genome. A major obstacle to …

Targeted Diversification in the S. cerevisiae Genome with CRISPR-Guided DNA Polymerase I

CJ Tou, DV Schaffer, JE Dueber - ACS Synthetic Biology, 2020 - ACS Publications
New technologies to target nucleotide diversification in vivo are promising enabling
strategies to perform directed evolution for engineering applications and forward genetics for …

Fine-tuning next-generation genome editing tools

CN Kanchiswamy, M Maffei, M Malnoy, R Velasco… - Trends in …, 2016 - cell.com
The availability of genome sequences of numerous organisms and the revolution brought
about by genome editing tools (eg, ZFNs, TALENs, and CRISPR/Cas9 or RGENs) has …

Multiplexed CRISPR/Cas9 Genome Editing and Gene Regulation Using Csy4 in Saccharomyces cerevisiae

R Ferreira, C Skrekas, J Nielsen, F David - ACS synthetic biology, 2018 - ACS Publications
Clustered regularly interspaced short palindromic repeats (CRISPR) technology has greatly
accelerated the field of strain engineering. However, insufficient efforts have been made …

Lack of evidence for existence of noncanonical RNA editing

R Piskol, Z Peng, J Wang, JB Li - Nature biotechnology, 2013 - nature.com
To the Editor: RNA editing, the post-transcriptional modification of genomic information,
results in variation that can be observed in the transcriptome. In mammals, only two types of …

CRISPRi repression of nonhomologous end‐joining for enhanced genome engineering via homologous recombination in Yarrowia lipolytica

C Schwartz, K Frogue, A Ramesh… - Biotechnology and …, 2017 - Wiley Online Library
In many organisms of biotechnological importance precise genome editing is limited by
inherently low homologous recombination (HR) efficiencies. A number of strategies exist to …

AGEseq: analysis of genome editing by sequencing

LJ Xue, CJ Tsai - Molecular plant, 2015 - cell.com
Knockout experiments are critical for the evaluation of gene function. Researchers have
increasingly relied on genome editing technologies for precise mutagenesis at loci of …

Inducible in vivo genome editing with CRISPR-Cas9

LE Dow, J Fisher, KP O'rourke, A Muley… - Nature …, 2015 - nature.com
CRISPR-Cas9-based genome editing enables the rapid genetic manipulation of any
genomic locus without the need for gene targeting by homologous recombination. Here we …

Increasing the efficiency of homology-directed repair for CRISPR-Cas9-induced precise gene editing in mammalian cells

VT Chu, T Weber, B Wefers, W Wurst, S Sander… - Nature …, 2015 - nature.com
The insertion of precise genetic modifications by genome editing tools such as CRISPR-
Cas9 is limited by the relatively low efficiency of homology-directed repair (HDR) compared …

Cytosine base editor generates substantial off-target single-nucleotide variants in mouse embryos

E Zuo, Y Sun, W Wei, T Yuan, W Ying, H Sun, L Yuan… - Science, 2019 - science.org
Genome editing holds promise for correcting pathogenic mutations. However, it is difficult to
determine off-target effects of editing due to single-nucleotide polymorphism in individuals …