Genetic variation ranging from single-nucleotide polymorphisms to large structural variants
(SVs) can cause variation of gene content among individuals within the same species. There …

Since the first reported crop pangenome in 2014, advances in high‐throughput and cost‐
effective DNA sequencing technologies facilitated multiple such studies including the …

Crop genomics has seen dramatic advances in recent years due to improvements in
sequencing technology, assembly methods, and computational resources. These advances …

The pangenome provides genomic variations in the cultivated gene pool for a given species.
However, as the crop's gene pool comprises many species, especially wild relatives with …

Pan-genomics can encompass most of the genetic diversity of a species or population and
has proved to be a powerful tool for studying genomic evolution and the origin and …

Pan-genomic studies aim at representing the entire sequence diversity within a species to
provide useful resources for evolutionary studies, functional genomics and breeding of …

Recent years have seen a surge in plant genome sequencing projects and the comparison
of multiple related individuals. The high degree of genomic variation observed led to the …

The sequencing of large and complex genomes of crop species, facilitated by new
sequencing technologies and bioinformatic approaches, has provided new opportunities for …

Increasing evidence suggests that a single individual is insufficient to capture the genetic
diversity within a species due to gene presence absence variation. In order to understand …

Gene expression variation largely contributes to phenotypic diversity and constructing pan-
transcriptome is considered necessary for species with complex genomes. However, the …