Long‐read sequencing reveals widespread intragenic structural variants in a recent allopolyploid crop plant

HS Chawla, HT Lee, I Gabur, P Vollrath… - Plant biotechnology …, 2021 - Wiley Online Library
Genome structural variation (SV) contributes strongly to trait variation in eukaryotic species
and may have an even higher functional significance than single‐nucleotide polymorphism …

[HTML][HTML] Applications of multi-omics technologies for crop improvement

Y Yang, MA Saand, L Huang, WB Abdelaal… - Frontiers in Plant …, 2021 - frontiersin.org
Multiple “omics” approaches have emerged as successful technologies for plant systems
over the last few decades. Advances in next-generation sequencing (NGS) have paved a …

The pangenome of hexaploid bread wheat

JD Montenegro, AA Golicz, PE Bayer… - The Plant …, 2017 - Wiley Online Library
There is an increasing understanding that variation in gene presence–absence plays an
important role in the heritability of agronomic traits; however, there have been relatively few …

[HTML][HTML] Advances in integrating genomics and bioinformatics in the plant breeding pipeline

H Hu, A Scheben, D Edwards - Agriculture, 2018 - mdpi.com
With the global human population growing rapidly, agricultural production must increase to
meet crop demand. Improving crops through breeding is a sustainable approach to increase …

Next-generation sequencing technologies and their implications for crop genetics and breeding

RK Varshney, SN Nayak, GD May, SA Jackson - Trends in biotechnology, 2009 - cell.com
Using next-generation sequencing technologies it is possible to resequence entire plant
genomes or sample entire transcriptomes more efficiently and economically and in greater …

[HTML][HTML] Advanced high-throughput plant phenotyping techniques for genome-wide association studies: A review

Q Xiao, X Bai, C Zhang, Y He - Journal of advanced research, 2022 - Elsevier
Background Linking phenotypes and genotypes to identify genetic architectures that
regulate important traits is crucial for plant breeding and the development of plant genomics …

[HTML][HTML] Pea (Pisum sativum L.) in the Genomic Era

P Smýkal, G Aubert, J Burstin, CJ Coyne, NTH Ellis… - Agronomy, 2012 - mdpi.com
Pea (Pisum sativum L.) was the original model organism used in Mendel's discovery (1866)
of the laws of inheritance, making it the foundation of modern plant genetics. However …

PANOMICS meets germplasm

W Weckwerth, A Ghatak, A Bellaire… - Plant Biotechnology …, 2020 - Wiley Online Library
Genotyping‐by‐sequencing has enabled approaches for genomic selection to improve
yield, stress resistance and nutritional value. More and more resource studies are emerging …

Genomic innovation for crop improvement

MW Bevan, C Uauy, BBH Wulff, J Zhou, K Krasileva… - Nature, 2017 - nature.com
Crop production needs to increase to secure future food supplies, while reducing its impact
on ecosystems. Detailed characterization of plant genomes and genetic diversity is crucial …

Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding

M Mascher, M Schreiber, U Scholz, A Graner, JC Reif… - Nature …, 2019 - nature.com
Genebanks have the long-term mission of preserving plant genetic resources as an
agricultural legacy for future crop improvement. Operating procedures for seed storage and …