Genomic innovation for crop improvement

MW Bevan, C Uauy, BBH Wulff, J Zhou, K Krasileva… - Nature, 2017 - nature.com
Crop production needs to increase to secure future food supplies, while reducing its impact
on ecosystems. Detailed characterization of plant genomes and genetic diversity is crucial …

Wheat Panache: A pangenome graph database representing presence–absence variation across sixteen bread wheat genomes

PE Bayer, J Petereit, É Durant, C Monat… - The Plant …, 2022 - Wiley Online Library
Bread wheat (Triticum aestivum L.) is one of humanity's most important staple crops,
characterized by a large and complex genome with a high level of gene presence–absence …

High-throughput phenotyping for crop improvement in the genomics era

RR Mir, M Reynolds, F Pinto, MA Khan, MA Bhat - Plant Science, 2019 - Elsevier
Tremendous progress has been made with continually expanding genomics technologies to
unravel and understand crop genomes. However, the impact of genomics data on crop …

GWAS Atlas: an updated knowledgebase integrating more curated associations in plants and animals

X Liu, D Tian, C Li, B Tang, Z Wang… - Nucleic Acids …, 2023 - academic.oup.com
Abstract GWAS Atlas (https://ngdc. cncb. ac. cn/gwas/) is a manually curated resource of
genome-wide genotype-to-phenotype associations for a wide range of species. Here, we …

Genic and nongenic contributions to natural variation of quantitative traits in maize

X Li, C Zhu, CT Yeh, W Wu, EM Takacs… - Genome …, 2012 - genome.cshlp.org
The complex genomes of many economically important crops present tremendous
challenges to understand the genetic control of many quantitative traits with great …

Natural variation in crops: realized understanding, continuing promise

Y Liang, HJ Liu, J Yan, F Tian - Annual review of plant biology, 2021 - annualreviews.org
Crops feed the world's population and shape human civilization. The improvement of crop
productivity has been ongoing for almost 10,000 years and has evolved from an experience …

Analysis of plant pan-genomes and transcriptomes with GET_HOMOLOGUES-EST, a clustering solution for sequences of the same species

B Contreras-Moreira, CP Cantalapiedra… - Frontiers in plant …, 2017 - frontiersin.org
The pan-genome of a species is defined as the union of all the genes and non-coding
sequences found in all its individuals. However, constructing a pan-genome for plants with …

[引用][C] Genomics-assisted plant breeding in the 21st century: technological advances and progress

SP Kumpatla, R Buyyarapu, IY Abdurakhmonov… - 2012 - intechopen.com
One of the key global challenges of the 21st century is the production of enough food for the
increasing world population. As per some recent reports the global population will continue …

Progress, challenges and the future of crop genomes

TP Michael, R VanBuren - Current opinion in plant biology, 2015 - Elsevier
Highlights•NGS speed and capacity enable over 100 published plant genomes.•
Underserved specialty and orphan crop genomic resources grow due to low cost …

Genotyping‐by‐sequencing for plant breeding and genetics

JA Poland, TW Rife - The plant genome, 2012 - Wiley Online Library
Rapid advances in “next‐generation” DNA sequencing technology have brought the US
$1000 human (Homo sapiens) genome within reach while providing the raw sequencing …