[HTML][HTML] Transcriptome profiling of laser-captured crown root primordia reveals new pathways activated during early stages of crown root formation in rice

J Lavarenne, M Gonin, A Champion, M Javelle… - Plos one, 2020 - journals.plos.org
Crown roots constitute the main part of the rice root system. Several key genes involved in
crown root initiation and development have been identified by functional genomics …

Genome‐wide transcriptome dissection of the rice root system: implications for developmental and physiological functions

H Takehisa, Y Sato, M Igarashi, T Abiko… - The Plant …, 2012 - Wiley Online Library
The root system is a crucial determinant of plant growth potential because of its important
functions, eg uptake of water and nutrients, structural support and interaction with symbiotic …

Inference of the gene regulatory network acting downstream of CROWN ROOTLESS 1 in rice reveals a regulatory cascade linking genes involved in auxin signaling …

J Lavarenne, M Gonin, S Guyomarc'h… - The Plant …, 2019 - Wiley Online Library
Crown roots (CRs) are essential components of the rice root system. Several genes involved
in CR initiation or development have been identified but our knowledge about how they …

[HTML][HTML] Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice

Y Coudert, M Bès, T Van Anh Le, M Pré, E Guiderdoni… - BMC genomics, 2011 - Springer
Background In rice, the major part of the post-embryonic root system is made of stem-
derived roots named crown roots (CR). Among the few characterized rice mutants affected in …

Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing

T Kyndt, S Denil, A Haegeman… - Journal of …, 2012 - academic.oup.com
Despite the major physiological dissimilarities between mature root regions and their tips,
differences in their gene expression profiles remain largely unexplored. In this research, the …

Genome-wide high resolution expression map and functions of key cell fate determinants reveal the dynamics of crown root development in rice

T Garg, Z Singh, AK Dwivedi, V Varapparambathu… - BioRxiv, 2020 - biorxiv.org
Shoot borne adventitious/crown roots (AR/CR) shape up the root architecture in grasses.
Mechanisms underlying initiation and subsequent outgrowth of CR remain largely unknown …

Auxin-responsive (phospho) proteome analysis reveals key biological processes and signaling associated with shoot-borne crown root development in rice

H Singh, Z Singh, T Zhu, X Xu… - Plant and Cell …, 2022 - academic.oup.com
The rice root system is primarily composed of shoot-borne adventitious/crown roots
(ARs/CRs) that develop from the coleoptile base, and therefore, it is an excellent model …

Identification of CROWN ROOTLESS 1‐regulated genes in rice reveals specific and conserved elements of postembryonic root formation

Y Coudert, VAT Le, H Adam, M Bes, F Vignols… - New …, 2015 - Wiley Online Library
In monocotyledons, the root system is mostly composed of postembryonic shoot‐borne roots
called crown roots. In rice (Oryza sativa), auxin promotes crown root initiation via the LOB …

[HTML][HTML] Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root

TQ Zhang, Y Chen, Y Liu, WH Lin, JW Wang - Nature communications, 2021 - nature.com
Root development relies on the establishment of meristematic tissues that give rise to
distinct cell types that differentiate across defined temporal and spatial gradients. Dissection …

Species-specific function of conserved regulators in orchestrating rice root architecture

T Garg, Z Singh, K Chennakesavulu… - …, 2022 - journals.biologists.com
Shoot-borne adventitious/crown roots form a highly derived fibrous root system in grasses.
The molecular mechanisms controlling their development remain largely unknown. Here, we …