Intrinsically disordered sequences enable modulation of protein phase separation through distributed tyrosine motifs

Y Lin, SL Currie, MK Rosen - Journal of Biological Chemistry, 2017 - ASBMB
Liquid–liquid phase separation (LLPS) is thought to contribute to the establishment of many
biomolecular condensates, eukaryotic cell structures that concentrate diverse …

Dynamic control of X chromosome conformation and repression by a histone H4K20 demethylase

K Brejc, Q Bian, S Uzawa, BS Wheeler, EC Anderson… - Cell, 2017 - cell.com
Chromatin modification and higher-order chromosome structure play key roles in gene
regulation, but their functional interplay in controlling gene expression is elusive. We have …

General and target-specific DExD/H RNA helicases in eukaryotic translation initiation

L Shen, J Pelletier - International journal of molecular sciences, 2020 - mdpi.com
DExD (DDX)-and DExH (DHX)-box RNA helicases, named after their Asp-Glu-x-Asp/His
motifs, are integral to almost all RNA metabolic processes in eukaryotic cells. They play …

Protein displacement by DExH/D" RNA helicases" without duplex unwinding

ME Fairman, PA Maroney, W Wang, HA Bowers… - Science, 2004 - science.org
Members of the DExH/D superfamily of nucleic acid–activated nucleotide triphosphatases
are essential for virtually all aspects of RNA metabolism, including pre–messenger RNA …

DDM1 and Lsh remodelers allow methylation of DNA wrapped in nucleosomes

DB Lyons, D Zilberman - Elife, 2017 - elifesciences.org
Cytosine methylation regulates essential genome functions across eukaryotes, but the
fundamental question of whether nucleosomal or naked DNA is the preferred substrate of …

Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification

JJ Quinn, IA Ilik, K Qu, P Georgiev, C Chu… - Nature …, 2014 - nature.com
Little is known about the functional domain architecture of long noncoding RNAs (lncRNAs)
because of a relative paucity of suitable methods to analyze RNA function at a domain level …

The DEXD/H-box RNA helicase DDX19 is regulated by an α-helical switch

R Collins, T Karlberg, L Lehtio, P Schutz… - Journal of Biological …, 2009 - ASBMB
DEXD/H-box RNA helicases couple ATP hydrolysis to RNA remodeling by an unknown
mechanism. We used x-ray crystallography and biochemical analysis of the human DEXD/H …

Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing

PL Chang, JP Dunham, SV Nuzhdin, MN Arbeitman - BMC genomics, 2011 - Springer
Background Understanding animal development and physiology at a molecular-biological
level has been advanced by the ability to determine at high resolution the repertoire of …

RNA helicase DDX3: at the crossroad of viral replication and antiviral immunity

F Valiente‐Echeverría, MA Hermoso… - Reviews in medical …, 2015 - Wiley Online Library
Summary Asp‐Glu‐Ala‐Asp (DEAD)‐box polypeptide 3, or DDX3, belongs to the DEAD‐box
family of ATP‐dependent RNA helicases and is known to play different roles in RNA …

SLERT regulates DDX21 rings associated with Pol I transcription

YH Xing, RW Yao, Y Zhang, CJ Guo, S Jiang, G Xu… - Cell, 2017 - cell.com
Dysregulated rRNA synthesis by RNA polymerase I (Pol I) is associated with uncontrolled
cell proliferation. Here, we report a box H/ACA small nucleolar RNA (snoRNA)-ended long …