New approach for the correction of ab initio molecular force fields in Cartesian coordinates

IV Kochikov, GM Kuramshina… - International Journal of …, 2009 - Wiley Online Library
This paper presents a scaling technique applicable to molecular force constants in
Cartesian coordinates. In the course of spectroscopic and structural research, it is a common …

Systematic comparison of experimental, quantum mechanical, and molecular mechanical bond lengths for organic molecules

B Ma, JH Lii, HF Schaefer… - The Journal of Physical …, 1996 - ACS Publications
Ab initio calculations give, with an accuracy depending on the sophistication of the method,
a bond length as an equilibrium value, r e. The experimental bond lengths are always …

Exceptionally long covalent CC bonds—A local vibrational mode study

AAA Delgado, A Humason, R Kalescky, M Freindorf… - Molecules, 2021 - mdpi.com
For decades one has strived to synthesize a compound with the longest covalent C− C bond
applying predominantly steric hindrance and/or strain to achieve this goal. On the other …

Investigating the calculation of anharmonic vibrational frequencies using force fields derived from density functional theory

MWD Hanson-Heine, MW George… - The Journal of Physical …, 2012 - ACS Publications
The calculation of anharmonic vibrational frequencies for a set of small molecules has been
examined to explore the merit of applying such computationally expensive approaches for …

The gradient curves method: An improved strategy for the derivation of molecular mechanics valence force fields from ab initio data

T Verstraelen, D Van Neck, PW Ayers… - Journal of Chemical …, 2007 - ACS Publications
A novel force-field development strategy is proposed that tackles the well-known difficulty of
parameter correlations arising in a conventional least-squares optimization. In the first step …

Refined procedure of evaluating experimental single-molecule force spectroscopy data

A Fuhrmann, D Anselmetti, R Ros, S Getfert… - Physical Review E …, 2008 - APS
Dynamic force spectroscopy is a well-established tool to study molecular recognition in a
wide range of binding affinities on the single-molecule level. The theoretical interpretation of …

Determination of energy barriers for intermolecular interactions by variable temperature dynamic force spectroscopy

S Zepeda, Y Yeh, A Noy - Langmuir, 2003 - ACS Publications
Intermolecular interactions in chemistry and biology are governed by complex potential
energy surfaces. Despite recent advances in nanoscale interaction force measurements …

Comparison of methods to obtain force-field parameters for metal sites

LH Hu, U Ryde - Journal of Chemical Theory and Computation, 2011 - ACS Publications
We have critically examined and compared various ways to obtain standard harmonic
molecular mechanics (MM) force-field parameters for metal sites in proteins, using the 12 …

Intermolecular symmetry-adapted perturbation theory study of large organic complexes

A Heßelmann, T Korona - The Journal of Chemical Physics, 2014 - pubs.aip.org
Binding energies for the complexes of the S12L database by Grimme [Chem. Eur. J. 18,
9955 (2012)] were calculated using intermolecular symmetry-adapted perturbation theory …

Method for the evaluation of normal modes and molecular mechanics with reduced sets of force constants. 1. Principles and reliability test

E Unger, RJ Lipski, W Dreybrodt… - Journal of Raman …, 1999 - Wiley Online Library
A novel method was developed for molecular mechanics calculations and normal mode
analysis. In this approach, the number of free parameters is strongly reduced compared with …