Effects of ligands on unfolding of the amyloid β-peptide central helix: mechanistic insights from molecular dynamics simulations
Polymerization of the amyloid β-peptide (Aβ), a process which requires that the helical
structure of Aβ unfolds beforehand, is suspected to cause neurodegeneration in Alzheimer's …
structure of Aβ unfolds beforehand, is suspected to cause neurodegeneration in Alzheimer's …
Side chain interactions can impede amyloid fibril growth: replica exchange simulations of Aβ peptide mutant
Using replica exchange molecular dynamics, we study the effect of Asp23Tyr mutation on
Aβ10− 40 fibril growth. The effect of this mutation is revealed through the computation of free …
Aβ10− 40 fibril growth. The effect of this mutation is revealed through the computation of free …
Molecular dynamics studies of hexamers of amyloid‐β peptide (16–35) and its mutants: Influence of charge states on amyloid formation
W Han, YD Wu - Proteins: Structure, Function, and …, 2007 - Wiley Online Library
To study the early stage of amyloid‐β peptide (Aβ) aggregation, hexamers of the wild‐type
(WT) Aβ16–35 and its mutants with amyloid‐like conformations have been studied by …
(WT) Aβ16–35 and its mutants with amyloid‐like conformations have been studied by …
Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent
Y Lu, P Derreumaux, Z Guo… - Proteins: Structure …, 2009 - Wiley Online Library
Aggregation of the full‐length amyloid‐β (Aβ) and β2‐microglobulin (β2m) proteins is
associated with Alzheimer's disease and dialysis‐related amyloidosis, respectively. This …
associated with Alzheimer's disease and dialysis‐related amyloidosis, respectively. This …
[PDF][PDF] Towards understanding the early events in the conformational transition of amyloid beta peptides
It is experimentally known that oligomerization of amyloid beta peptides is accompanied by
a conformational transition from mainly alpha or random coil to beta sheets. The aim of this …
a conformational transition from mainly alpha or random coil to beta sheets. The aim of this …
Key residue for aggregation of amyloid-β peptides
SG Itoh, M Yagi-Utsumi, K Kato… - ACS Chemical …, 2022 - ACS Publications
It is known that oligomers of amyloid-β (Aβ) peptide are associated with Alzheimer's disease.
Aβ has two isoforms: Aβ40 and Aβ42. Although the difference between Aβ40 and Aβ42 is …
Aβ has two isoforms: Aβ40 and Aβ42. Although the difference between Aβ40 and Aβ42 is …
Molecular dynamics simulations and free energy analyses on the dimer formation of an amyloidogenic heptapeptide from human β2-microglobulin: implication for the …
Amyloid formation is associated with many neurodegenerative diseases. Recent findings
suggest that early oligomeric aggregates could be major sources of toxicity. We present a …
suggest that early oligomeric aggregates could be major sources of toxicity. We present a …
Molecular Dynamics Insight into the Diverse Thermodynamic Behavior of a Beta‐Hairpin Peptide
The b‐hairpin is a building block in the β‐sheet structure. Understanding the formation of the
β‐hairpin may provide insight into the formation of β‐sheet structures in, for example, protein …
β‐hairpin may provide insight into the formation of β‐sheet structures in, for example, protein …
Unique example of amyloid aggregates stabilized by main chain H-bond instead of the steric zipper: molecular dynamics study of the amyloidogenic segment of …
WM Berhanu, AE Masunov - Journal of Molecular Modeling, 2012 - Springer
Most proteins do not aggregate while in their native functional states. However, they may be
disturbed from their native conformation by certain change in the environment, and form …
disturbed from their native conformation by certain change in the environment, and form …
Model amyloid peptide B18 monomer and dimer studied by replica exchange molecular dynamics simulations
V Knecht - The Journal of Physical Chemistry B, 2010 - ACS Publications
Peptide misfolding and aggregation are the early steps during the formation of amyloid
fibrils. Understanding these processes in detail is crucial for the development of therapeutic …
fibrils. Understanding these processes in detail is crucial for the development of therapeutic …