Conformational dynamics and stability of U-shaped and S-shaped amyloid β assemblies

G Grasso, M Rebella, S Muscat, U Morbiducci… - International journal of …, 2018 - mdpi.com
Alzheimer's disease is the most fatal neurodegenerative disorder characterized by the
aggregation and deposition of Amyloid β (Aβ) oligomers in the brain of patients. Two …

Conformational transition of amyloid β-peptide

Y Xu, J Shen, X Luo, W Zhu, K Chen… - Proceedings of the …, 2005 - National Acad Sciences
The amyloid β-peptides (Aβs), containing 39–43 residues, are the key protein components
of amyloid deposits in Alzheimer's disease. To structurally characterize the dynamic …

Influence of end-capping on the self-assembly of model amyloid peptide fragments

V Castelletto, IW Hamley, C Cenker… - The Journal of …, 2011 - ACS Publications
The influence of charge and aromatic stacking interactions on the self-assembly of a series
of four model amyloid peptides has been examined. The four model peptides are based on …

Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein

L Cruz, JS Rao, DB Teplow… - The Journal of Physical …, 2012 - ACS Publications
The amyloid β-protein (Aβ), which is present predominately as a 40-or 42-residue peptide, is
postulated to play a seminal role in the pathogenesis of Alzheimer's disease (AD). Folding of …

Molecular modeling of two distinct triangular oligomers in amyloid β-protein

J Zheng, X Yu, J Wang, JC Yang… - The journal of physical …, 2010 - ACS Publications
Amyloid-β (Aβ) peptides exhibit many distinct structural morphology at the early aggregate
stage, some of which are biological relevant to the pathogenesis of Alzheimer's disease …

Pyroglutamate-modified amyloid β (3–42) monomer has more β-sheet content than the amyloid β (1–42) monomer

S Nath, AK Buell, B Barz - Physical Chemistry Chemical Physics, 2023 - pubs.rsc.org
The aggregation of the amyloid β (Aβ) peptide is a major hallmark of Alzheimer's disease.
This peptide can aggregate into oligomers, proto-fibrils and mature fibrils, which eventually …

Computational backbone mutagenesis of Aβ peptides: probing the role of backbone hydrogen bonds in aggregation

T Takeda, DK Klimov - The Journal of Physical Chemistry B, 2010 - ACS Publications
Using replica exchange molecular dynamics (REMD) and united atom implicit solvent model
we examine the role of backbone hydrogen bonds (HBs) in Aβ aggregation. The importance …

Comparative molecular dynamics study of human islet amyloid polypeptide (IAPP) and rat IAPP oligomers

G Liang, J Zhao, X Yu, J Zheng - Biochemistry, 2013 - ACS Publications
Human islet amyloid polypeptide (hIAPP or amylin) is a causative agent in pancreatic
amyloid deposits found in patients with type 2 diabetes. The aggregation of full-length …

Modeling the α-helix to β-hairpin transition mechanism and the formation of oligomeric aggregates of the fibrillogenic peptide Aβ (12–28): insights from all-atom …

F Simona, G Tiana, RA Broglia, G Colombo - Journal of Molecular Graphics …, 2004 - Elsevier
In this paper, all-atom molecular dynamics simulations in explicit solvent are used to
investigate the structural and dynamical determinants of the α-helical to β-hairpin …

β-hairpin folding by a model amyloid peptide in solution and at an interface

V Knecht - The Journal of Physical Chemistry B, 2008 - ACS Publications
The development of specific agents against amyloidoses requires an understanding of the
conformational distribution of fibrillogenic peptides at a microscopic level. Here, I present …