An R package for Bayesian analysis of multi-environment and multi-trait multi-environment data for genome-based prediction
OA Montesinos-López… - G3: Genes …, 2019 - academic.oup.com
Evidence that genomic selection (GS) is a technology that is revolutionizing plant breeding
continues to grow. However, it is very well documented that its success strongly depends on …
continues to grow. However, it is very well documented that its success strongly depends on …
Multi-trait, multi-environment deep learning modeling for genomic-enabled prediction of plant traits
OA Montesinos-López… - G3: Genes, genomes …, 2018 - academic.oup.com
Multi-trait and multi-environment data are common in animal and plant breeding programs.
However, what is lacking are more powerful statistical models that can exploit the correlation …
However, what is lacking are more powerful statistical models that can exploit the correlation …
A Bayesian genomic multi-output regressor stacking model for predicting multi-trait multi-environment plant breeding data
OA Montesinos-López… - G3: Genes …, 2019 - academic.oup.com
In this paper we propose a Bayesian multi-output regressor stacking (BMORS) model that is
a generalization of the multi-trait regressor stacking method. The proposed BMORS model …
a generalization of the multi-trait regressor stacking method. The proposed BMORS model …
A genomic Bayesian multi-trait and multi-environment model
OA Montesinos-López… - G3: Genes …, 2016 - academic.oup.com
When information on multiple genotypes evaluated in multiple environments is recorded, a
multi-environment single trait model for assessing genotype× environment interaction (G× E) …
multi-environment single trait model for assessing genotype× environment interaction (G× E) …
Bayesian genomic prediction with genotype× environment interaction kernel models
The phenomenon of genotype× environment (G× E) interaction in plant breeding decreases
selection accuracy, thereby negatively affecting genetic gains. Several genomic prediction …
selection accuracy, thereby negatively affecting genetic gains. Several genomic prediction …
Genome and environment based prediction models and methods of complex traits incorporating genotype× environment interaction
J Crossa, OA Montesinos-Lopez… - Genomic Prediction of …, 2022 - Springer
Genomic-enabled prediction models are of paramount importance for the successful
implementation of genomic selection (GS) based on breeding values. As opposed to animal …
implementation of genomic selection (GS) based on breeding values. As opposed to animal …
A Bayesian Poisson-lognormal model for count data for multiple-trait multiple-environment genomic-enabled prediction
OA Montesinos-López… - G3: Genes …, 2017 - academic.oup.com
When a plant scientist wishes to make genomic-enabled predictions of multiple traits
measured in multiple individuals in multiple environments, the most common strategy for …
measured in multiple individuals in multiple environments, the most common strategy for …
Bayesian multitrait kernel methods improve multienvironment genome-based prediction
OA Montesinos-López, JC Montesinos-López… - G3, 2022 - academic.oup.com
When multitrait data are available, the preferred models are those that are able to account
for correlations between phenotypic traits because when the degree of correlation is …
for correlations between phenotypic traits because when the degree of correlation is …
A Bayesian method and its variational approximation for prediction of genomic breeding values in multiple traits
T Hayashi, H Iwata - BMC bioinformatics, 2013 - Springer
Background Genomic selection is an effective tool for animal and plant breeding, allowing
effective individual selection without phenotypic records through the prediction of genomic …
effective individual selection without phenotypic records through the prediction of genomic …
Multi-trait genome prediction of new environments with partial least squares
OA Montesinos-López, A Montesinos-López… - Frontiers in …, 2022 - frontiersin.org
The genomic selection (GS) methodology proposed over 20 years ago by Meuwissen et
al.(Genetics, 2001) has revolutionized plant breeding. A predictive methodology that trains …
al.(Genetics, 2001) has revolutionized plant breeding. A predictive methodology that trains …