[HTML][HTML] Genomic databases for crop improvement

K Lai, MT Lorenc, D Edwards - Agronomy, 2012 - mdpi.com
Genomics is playing an increasing role in plant breeding and this is accelerating with the
rapid advances in genome technology. Translating the vast abundance of data being …

IPOP: an integrative plant multi-omics platform for cross-species comparison and evolutionary study

W Huang, X Hu, Y Ren, M Song, C Ma… - Molecular Biology and …, 2023 - academic.oup.com
The advent of high-throughput sequencing technologies has led to the production of a
significant amount of omics data in plants, which serves as valuable assets for conducting …

Genome‐wide identification studies–A primer to explore new genes in plant species

I Safder, G Shao, Z Sheng, P Hu, S Tang - Plant Biology, 2022 - Wiley Online Library
Genome data have accumulated rapidly in recent years, doubling roughly after every 6
months due to the influx of next‐generation sequencing technologies. A plethora of plant …

Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding

M Mascher, M Schreiber, U Scholz, A Graner, JC Reif… - Nature …, 2019 - nature.com
Genebanks have the long-term mission of preserving plant genetic resources as an
agricultural legacy for future crop improvement. Operating procedures for seed storage and …

Munich information center for protein sequences plant genome resources. A framework for integrative and comparative analyses

H Schoof, M Spannagl, L Yang, R Ernst… - Plant …, 2005 - academic.oup.com
With several plant genomes sequenced, the power of comparative genome analysis can
now be applied. However, genome-scale cross-species analyses are limited by the effort for …

[HTML][HTML] Plant GARDEN: a portal website for cross-searching between different types of genomic and genetic resources in a wide variety of plant species

H Ichihara, M Yamada, M Kohara, H Hirakawa… - BMC Plant …, 2023 - Springer
Background Plant genome information is fundamental to plant research and development.
Along with the increase in the number of published plant genomes, there is a need for an …

Bioinformatic Resources for Plant Genomic Research

SK Valsala Sudarsanan, N Sreekumar - Current Bioinformatics, 2024 - ingentaconnect.com
Genome assembly and annotation are crucial steps in plant genomics research as they
provide valuable insights into plant genetic makeup, gene regulation, evolutionary history …

GWAS Atlas: an updated knowledgebase integrating more curated associations in plants and animals

X Liu, D Tian, C Li, B Tang, Z Wang… - Nucleic Acids …, 2023 - academic.oup.com
Abstract GWAS Atlas (https://ngdc. cncb. ac. cn/gwas/) is a manually curated resource of
genome-wide genotype-to-phenotype associations for a wide range of species. Here, we …

PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants

M Van Bel, F Silvestri, EM Weitz, L Kreft… - Nucleic Acids …, 2022 - academic.oup.com
PLAZA is a platform for comparative, evolutionary, and functional plant genomics. It makes a
broad set of genomes, data types and analysis tools available to researchers through a user …

Updates on Genomic Resources for Crop Improvement

A Narayan, P Chitkara, S Kumar - Genomics of Cereal Crops, 2022 - Springer
An increasing number of crop genomic resources, with novel technical achievements in
genome analytics have led to dramatic changes in the landscape of agricultural research …