MIPSPlantsDB—plant database resource for integrative and comparative plant genome research

M Spannagl, O Noubibou, D Haase… - Nucleic Acids …, 2007 - academic.oup.com
Genome-oriented plant research delivers rapidly increasing amount of plant genome data.
Comprehensive and structured information resources are required to structure and …

Escape from the laboratory: new horizons for plant genetics

M Rossetto, RJ Henry - Trends in plant science, 2014 - cell.com
Next generation sequencing (NGS) is changing the way biologists work, as large amounts of
genetic data can be easily outsourced commercially. Consequently, crucial research efforts …

Translational genomics for plant breeding with the genome sequence explosion

YJ Kang, T Lee, J Lee, S Shim, H Jeong… - Plant biotechnology …, 2016 - Wiley Online Library
The use of next‐generation sequencers and advanced genotyping technologies has
propelled the field of plant genomics in model crops and plants and enhanced the discovery …

Bioinformatics for Plant Genetics and Breeding Research

YD Naik, C Zhao, S Channale, SN Nayak… - … Technologies for Crop …, 2024 - Springer
Global food demand is expected to increase between 55 and 70% by 2050. Plant breeders
and geneticists are constantly under pressure to develop high-yielding climate-resilient …

Back to wild relatives for future breeding through super-pangenome

A Raza, A Bohra, V Garg, RK Varshney - Molecular Plant, 2023 - cell.com
Crop wild relatives (CWRs) deliver untapped genetic diversity as they contain valuable 10
breeding traits absent in the cultivated pool, eg, traits imparting climate resilience …

Genomics and transcriptomics advance in plant sciences

B Pucker, HM Schilbert - Molecular Approaches in Plant Biology and …, 2019 - Springer
Recent progress in sequencing technologies facilitates plant science experiments through
the availability of genome and transcriptome sequences. Genome assemblies provide …

[HTML][HTML] An updated functional annotation of protein-coding genes in the cucumber genome

H Song, K Lin, J Hu, E Pang - Frontiers in Plant Science, 2018 - frontiersin.org
Background: Although the cucumber reference genome and its annotation were published
several years ago, the functional annotation of predicted genes, particularly protein-coding …

Bioinformatics resources for plant genomics: Opportunities and bottlenecks in the-omics era

L Ambrosino, C Colantuono, F Monticolo… - Current Issues in …, 2018 - mdpi.com
The sudden exponential increase of biological data concerning genome structure and
functionalities, also fostered by the advent of next-generation sequencing technologies …

Technology-enabled great leap in deciphering plant genomes

L Xie, X Gong, K Yang, Y Huang, S Zhang, L Shen… - Nature Plants, 2024 - nature.com
Plant genomes provide essential and vital basic resources for studying many aspects of
plant biology and applications (for example, breeding). From 2000 to 2020, 1,144 genomes …

Dissecting plant genomes with the PLAZA comparative genomics platform

M Van Bel, S Proost, E Wischnitzki, S Movahedi… - Plant …, 2012 - academic.oup.com
With the arrival of low-cost, next-generation sequencing, a multitude of new plant genomes
are being publicly released, providing unseen opportunities and challenges for comparative …