[HTML][HTML] Identifying network biomarkers based on protein-protein interactions and expression data

J Xin, X Ren, L Chen, Y Wang - BMC medical genomics, 2015 - Springer
Identifying effective biomarkers to battle complex diseases is an important but challenging
task in biomedical research today. Molecular data of complex diseases is increasingly …

[HTML][HTML] Identification of diagnostic subnetwork markers for cancer in human protein-protein interaction network

J Su, BJ Yoon, ER Dougherty - BMC bioinformatics, 2010 - Springer
Background Finding reliable gene markers for accurate disease classification is very
challenging due to a number of reasons, including the small sample size of typical clinical …

[HTML][HTML] Incorporating topological information for predicting robust cancer subnetwork markers in human protein-protein interaction network

N Khunlertgit, BJ Yoon - BMC bioinformatics, 2016 - Springer
Background Discovering robust markers for cancer prognosis based on gene expression
data is an important yet challenging problem in translational bioinformatics. By integrating …

A Role for Protein–Protein Interaction Networks in the Identification and Characterization of Potential Biomarkers

AD Bosley, S Das, T Andresson - Proteomic and metabolomic approaches …, 2013 - Elsevier
Biomarkers play an important role in the field of medicine. Over the past decade, a
significant amount of data has been generated by high-throughput analysis, such as …

Discovering cooperative biomarkers for heterogeneous complex disease diagnoses

D Sun, X Ren, E Ari, T Korcsmaros… - Briefings in …, 2019 - academic.oup.com
Biomarkers with high reproducibility and accurate prediction performance can contribute to
comprehending the underlying pathogenesis of related complex diseases and further …

[HTML][HTML] BMRF-MI: integrative identification of protein interaction network by modeling the gene dependency

X Shi, X Wang, A Shajahan, L Hilakivi-Clarke, R Clarke… - BMC genomics, 2015 - Springer
Background Identification of protein interaction network is a very important step for
understanding the molecular mechanisms in cancer. Several methods have been …

A survey on biomarker identification based on molecular networks

G Zhu, XM Zhao, J Wu - Quantitative Biology, 2016 - Springer
Background Identifying biomarkers for accurate diagnosis and prognosis of diseases is
important for the prevention of disease development. The molecular networks that describe …

[HTML][HTML] Enriching human interactome with functional mutations to detect high-impact network modules underlying complex diseases

H Cui, S Srinivasan, D Korkin - Genes, 2019 - mdpi.com
Rapid progress in high-throughput-omics technologies moves us one step closer to the
datacalypse in life sciences. In spite of the already generated volumes of data, our …

[HTML][HTML] Networks as biomarkers: Uses and purposes

C Alfano, L Farina, M Petti - Genes, 2023 - mdpi.com
Networks-based approaches are often used to analyze gene expression data or protein–
protein interactions but are not usually applied to study the relationships between different …

Breast cancer candidate gene detection through integration of subcellular localization data with protein–protein interaction networks

X Tang, Q Xiao, K Yu - IEEE transactions on nanobioscience, 2020 - ieeexplore.ieee.org
Due to technological advances the quality and availability of biological data has increased
dramatically in the last decade. Analysing protein-protein interaction networks (PPINs) in an …