Properties of MHC class I presented peptides that enhance immunogenicity

JJA Calis, M Maybeno, JA Greenbaum… - PLoS computational …, 2013 - journals.plos.org
T-cells have to recognize peptides presented on MHC molecules to be activated and elicit
their effector functions. Several studies demonstrate that some peptides are more …

A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

P Wang, J Sidney, C Dow, B Mothé… - PLoS computational …, 2008 - journals.plos.org
The identification of MHC class II restricted peptide epitopes is an important goal in
immunological research. A number of computational tools have been developed for this …

The majority of immunogenic epitopes generate CD4+ T cells that are dependent on MHC class II-bound peptide-flanking residues

PY Arnold, NL La Gruta, T Miller, KM Vignali… - The Journal of …, 2002 - journals.aai.org
Peptides bind to MHC class II molecules with a defined periodicity such that the peptide-
flanking residues (PFRs) P-1 and P11, which lie outside the core binding sequence (P1 …

Degenerate T-cell recognition of peptides on MHC molecules creates large holes in the T-cell repertoire

JJA Calis, RJ De Boer, C Keşmir - PLoS computational biology, 2012 - journals.plos.org
The cellular immune system screens peptides presented by host cells on MHC molecules to
assess if the cells are infected. In this study we examined whether the presented peptides …

Methods and protocols for prediction of immunogenic epitopes

JC Tong, TW Tan, S Ranganathan - Briefings in Bioinformatics, 2007 - academic.oup.com
T-cell recognition of peptide/major histocompatibility complex (MHC) is a prerequisite for
cellular immunity. Recently, there has been an influx of bioinformatics tools to facilitate the …

Improved methods for predicting peptide binding affinity to MHC class II molecules

KK Jensen, M Andreatta, P Marcatili, S Buus… - …, 2018 - Wiley Online Library
Major histocompatibility complex class II (MHC‐II) molecules are expressed on the surface
of professional antigen‐presenting cells where they display peptides to T helper cells, which …

Peptide length significantly influences in vitro affinity for MHC class II molecules

C O'Brien, DR Flower, C Feighery - Immunome research, 2008 - Springer
Abstract Background Class II Major Histocompatibility Complex (MHC) molecules have an
open-ended binding groove which can accommodate peptides of varying lengths. Several …

SVMHC: a server for prediction of MHC-binding peptides

P Dönnes, O Kohlbacher - Nucleic acids research, 2006 - academic.oup.com
Identification of MHC-binding peptides is a prerequisite in rational design of T-cell based
peptide vaccines. During the past decade a number of computational approaches have …

Have we cut ourselves too short in mapping CTL epitopes?

SR Burrows, J Rossjohn, J McCluskey - Trends in immunology, 2006 - cell.com
MHC class I molecules generally present peptides of eight to ten amino acids; however,
peptides of 11–14 residues can also elicit dominant cytotoxic T lymphocyte responses …

Prediction of MHC-peptide binding: a systematic and comprehensive overview

EM Lafuente, PA Reche - Current pharmaceutical design, 2009 - ingentaconnect.com
T cell immune responses are driven by the recognition of peptide antigens (T cell epitopes)
that are bound to major histocompatibility complex (MHC) molecules. T cell epitope …