Properties of MHC class I presented peptides that enhance immunogenicity
JJA Calis, M Maybeno, JA Greenbaum… - PLoS computational …, 2013 - journals.plos.org
T-cells have to recognize peptides presented on MHC molecules to be activated and elicit
their effector functions. Several studies demonstrate that some peptides are more …
their effector functions. Several studies demonstrate that some peptides are more …
A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach
The identification of MHC class II restricted peptide epitopes is an important goal in
immunological research. A number of computational tools have been developed for this …
immunological research. A number of computational tools have been developed for this …
The majority of immunogenic epitopes generate CD4+ T cells that are dependent on MHC class II-bound peptide-flanking residues
PY Arnold, NL La Gruta, T Miller, KM Vignali… - The Journal of …, 2002 - journals.aai.org
Peptides bind to MHC class II molecules with a defined periodicity such that the peptide-
flanking residues (PFRs) P-1 and P11, which lie outside the core binding sequence (P1 …
flanking residues (PFRs) P-1 and P11, which lie outside the core binding sequence (P1 …
Degenerate T-cell recognition of peptides on MHC molecules creates large holes in the T-cell repertoire
JJA Calis, RJ De Boer, C Keşmir - PLoS computational biology, 2012 - journals.plos.org
The cellular immune system screens peptides presented by host cells on MHC molecules to
assess if the cells are infected. In this study we examined whether the presented peptides …
assess if the cells are infected. In this study we examined whether the presented peptides …
Methods and protocols for prediction of immunogenic epitopes
JC Tong, TW Tan, S Ranganathan - Briefings in Bioinformatics, 2007 - academic.oup.com
T-cell recognition of peptide/major histocompatibility complex (MHC) is a prerequisite for
cellular immunity. Recently, there has been an influx of bioinformatics tools to facilitate the …
cellular immunity. Recently, there has been an influx of bioinformatics tools to facilitate the …
Improved methods for predicting peptide binding affinity to MHC class II molecules
Major histocompatibility complex class II (MHC‐II) molecules are expressed on the surface
of professional antigen‐presenting cells where they display peptides to T helper cells, which …
of professional antigen‐presenting cells where they display peptides to T helper cells, which …
Peptide length significantly influences in vitro affinity for MHC class II molecules
C O'Brien, DR Flower, C Feighery - Immunome research, 2008 - Springer
Abstract Background Class II Major Histocompatibility Complex (MHC) molecules have an
open-ended binding groove which can accommodate peptides of varying lengths. Several …
open-ended binding groove which can accommodate peptides of varying lengths. Several …
SVMHC: a server for prediction of MHC-binding peptides
P Dönnes, O Kohlbacher - Nucleic acids research, 2006 - academic.oup.com
Identification of MHC-binding peptides is a prerequisite in rational design of T-cell based
peptide vaccines. During the past decade a number of computational approaches have …
peptide vaccines. During the past decade a number of computational approaches have …
Have we cut ourselves too short in mapping CTL epitopes?
MHC class I molecules generally present peptides of eight to ten amino acids; however,
peptides of 11–14 residues can also elicit dominant cytotoxic T lymphocyte responses …
peptides of 11–14 residues can also elicit dominant cytotoxic T lymphocyte responses …
Prediction of MHC-peptide binding: a systematic and comprehensive overview
EM Lafuente, PA Reche - Current pharmaceutical design, 2009 - ingentaconnect.com
T cell immune responses are driven by the recognition of peptide antigens (T cell epitopes)
that are bound to major histocompatibility complex (MHC) molecules. T cell epitope …
that are bound to major histocompatibility complex (MHC) molecules. T cell epitope …