Cardiac cell modelling: observations from the heart of the cardiac physiome project

M Fink, SA Niederer, EM Cherry, FH Fenton… - Progress in biophysics …, 2011 - Elsevier
In this manuscript we review the state of cardiac cell modelling in the context of international
initiatives such as the IUPS Physiome and Virtual Physiological Human Projects, which aim …

Computational biology of cardiac myocytes: proposed standards for the physiome

NP Smith, EJ Crampin, SA Niederer… - Journal of …, 2007 - journals.biologists.com
Predicting information about human physiology and pathophysiology from genomic data is a
compelling, but unfulfilled goal of post-genomic biology. This is the aim of the so-called …

The cardiac electrophysiology web lab

J Cooper, M Scharm, GR Mirams - Biophysical journal, 2016 - cell.com
Computational modeling of cardiac cellular electrophysiology has a long history, and many
models are now available for different species, cell types, and experimental preparations …

Cell-specific cardiac electrophysiology models

W Groenendaal, FA Ortega… - PLoS computational …, 2015 - journals.plos.org
The traditional cardiac model-building paradigm involves constructing a composite model
using data collected from many cells. Equations are derived for each relevant cellular …

Cellular cardiac electrophysiology modeling with Chaste and CellML

J Cooper, RJ Spiteri, GR Mirams - Frontiers in Physiology, 2015 - frontiersin.org
Chaste is an open-source C++ library for computational biology that has well-developed
cardiac electrophysiology tissue simulation support. In this paper, we introduce the features …

High-throughput functional curation of cellular electrophysiology models

J Cooper, GR Mirams, SA Niederer - Progress in biophysics and molecular …, 2011 - Elsevier
Effective reuse of a quantitative mathematical model requires not just access to curated
versions of the model equations, but also an understanding of the functional capabilities of …

Using Physiome standards to couple cellular functions for rat cardiac excitation–contraction

JR Terkildsen, S Niederer, EJ Crampin… - Experimental …, 2008 - Wiley Online Library
Scientific endeavour is reliant upon the extension and reuse of previous knowledge. The
formalization of this process for computational modelling is facilitated by the use of accepted …

[HTML][HTML] Variability in cardiac electrophysiology: using experimentally-calibrated populations of models to move beyond the single virtual physiological human …

A Muszkiewicz, OJ Britton, P Gemmell, E Passini… - Progress in biophysics …, 2016 - Elsevier
Physiological variability manifests itself via differences in physiological function between
individuals of the same species, and has crucial implications in disease progression and …

Evaluating computational efforts and physiological resolution of mathematical models of cardiac tissue

KH Jæger, JD Trotter, X Cai, H Arevalo, A Tveito - Scientific Reports, 2024 - nature.com
Computational techniques have significantly advanced our understanding of cardiac
electrophysiology, yet they have predominantly concentrated on averaged models that do …

From millimeters to micrometers; re-introducing myocytes in models of cardiac electrophysiology

KH Jæger, AG Edwards, WR Giles, A Tveito - Frontiers in Physiology, 2021 - frontiersin.org
Computational modeling has contributed significantly to present understanding of cardiac
electrophysiology including cardiac conduction, excitation-contraction coupling, and the …