Modeling transcriptional networks regulating secondary growth and wood formation in forest trees

L Liu, V Filkov, A Groover - Physiologia plantarum, 2014 - Wiley Online Library
The complex interactions among the genes that underlie a biological process can be
modeled and presented as a transcriptional network, in which genes (nodes) and their …

Identifying gene coexpression networks underlying the dynamic regulation of wood‐forming tissues in Populus under diverse environmental conditions

M Zinkgraf, L Liu, A Groover, V Filkov - New Phytologist, 2017 - Wiley Online Library
Trees modify wood formation through integration of environmental and developmental
signals in complex but poorly defined transcriptional networks, allowing trees to produce …

Genomic and physiological approaches to advancing forest tree improvement

CD Nelson, KH Johnsen - Tree Physiology, 2008 - academic.oup.com
The recent completion of a draft sequence of the poplar (Populus trichocarpa Torr. & Gray ex
Brayshaw) genome has advanced forest tree genetics to an unprecedented level. A “parts …

Genomics-based systems and multi-disciplinary approaches to unlock complex gene networks underlying wood formation

A Piot, YA El-Kassaby, I Porth - Current Forestry Reports, 2022 - Springer
Abstract Purpose of Review Wood represents an important economic natural resource and
the molecular regulatory mechanisms underlying its formation are best studied through …

Evolutionary network genomics of wood formation in a phylogenetic survey of angiosperm forest trees

M Zinkgraf, ST Zhao, C Canning, S Gerttula… - New …, 2020 - Wiley Online Library
Wood formation was present in early angiosperms, but has been highly modified through
evolution to generate the anatomical diversity seen in extant angiosperm lineages. In this …

Functional genomics in forest trees: application to the investigation of defense mechanisms and wood formation.

J MacKay, H Bérubé, S Regan, A Séguin - 2004 - cabidigitallibrary.org
The growing number of tree gene discovery projects reveals the existence of genes
associated with possible functions already evaluated in other plant species. However, a …

SND1 Transcription Factor–Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa

YC Lin, W Li, YH Sun, S Kumari, H Wei, Q Li… - The Plant …, 2013 - academic.oup.com
Wood is an essential renewable raw material for industrial products and energy. However,
knowledge of the genetic regulation of wood formation is limited. We developed a genome …

[HTML][HTML] Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa

P Dharmawardhana, AM Brunner, SH Strauss - BMC genomics, 2010 - Springer
Background With its genome sequence and other experimental attributes, Populus
trichocarpa has become the model species for genomic studies of wood development. Wood …

The transcriptomics of secondary growth and wood formation in conifers

A Carvalho, J Paiva, J Louzada… - Molecular Biology …, 2013 - Wiley Online Library
In the last years, forestry scientists have adapted genomics and next‐generation sequencing
(NGS) technologies to the search for candidate genes related to the transcriptomics of …

Single‐cell RNA sequencing reveals a high‐resolution cell atlas of xylem in Populus

H Li, X Dai, X Huang, M Xu, Q Wang… - Journal of Integrative …, 2021 - Wiley Online Library
High‐throughput single‐cell RNA sequencing (scRNA‐seq) has advantages over traditional
RNA‐seq to explore spatiotemporal information on gene dynamic expressions in …