Modeling transcriptional networks regulating secondary growth and wood formation in forest trees
The complex interactions among the genes that underlie a biological process can be
modeled and presented as a transcriptional network, in which genes (nodes) and their …
modeled and presented as a transcriptional network, in which genes (nodes) and their …
Identifying gene coexpression networks underlying the dynamic regulation of wood‐forming tissues in Populus under diverse environmental conditions
Trees modify wood formation through integration of environmental and developmental
signals in complex but poorly defined transcriptional networks, allowing trees to produce …
signals in complex but poorly defined transcriptional networks, allowing trees to produce …
Genomic and physiological approaches to advancing forest tree improvement
CD Nelson, KH Johnsen - Tree Physiology, 2008 - academic.oup.com
The recent completion of a draft sequence of the poplar (Populus trichocarpa Torr. & Gray ex
Brayshaw) genome has advanced forest tree genetics to an unprecedented level. A “parts …
Brayshaw) genome has advanced forest tree genetics to an unprecedented level. A “parts …
Genomics-based systems and multi-disciplinary approaches to unlock complex gene networks underlying wood formation
Abstract Purpose of Review Wood represents an important economic natural resource and
the molecular regulatory mechanisms underlying its formation are best studied through …
the molecular regulatory mechanisms underlying its formation are best studied through …
Evolutionary network genomics of wood formation in a phylogenetic survey of angiosperm forest trees
M Zinkgraf, ST Zhao, C Canning, S Gerttula… - New …, 2020 - Wiley Online Library
Wood formation was present in early angiosperms, but has been highly modified through
evolution to generate the anatomical diversity seen in extant angiosperm lineages. In this …
evolution to generate the anatomical diversity seen in extant angiosperm lineages. In this …
Functional genomics in forest trees: application to the investigation of defense mechanisms and wood formation.
The growing number of tree gene discovery projects reveals the existence of genes
associated with possible functions already evaluated in other plant species. However, a …
associated with possible functions already evaluated in other plant species. However, a …
SND1 Transcription Factor–Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa
Wood is an essential renewable raw material for industrial products and energy. However,
knowledge of the genetic regulation of wood formation is limited. We developed a genome …
knowledge of the genetic regulation of wood formation is limited. We developed a genome …
[HTML][HTML] Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa
P Dharmawardhana, AM Brunner, SH Strauss - BMC genomics, 2010 - Springer
Background With its genome sequence and other experimental attributes, Populus
trichocarpa has become the model species for genomic studies of wood development. Wood …
trichocarpa has become the model species for genomic studies of wood development. Wood …
The transcriptomics of secondary growth and wood formation in conifers
In the last years, forestry scientists have adapted genomics and next‐generation sequencing
(NGS) technologies to the search for candidate genes related to the transcriptomics of …
(NGS) technologies to the search for candidate genes related to the transcriptomics of …
Single‐cell RNA sequencing reveals a high‐resolution cell atlas of xylem in Populus
H Li, X Dai, X Huang, M Xu, Q Wang… - Journal of Integrative …, 2021 - Wiley Online Library
High‐throughput single‐cell RNA sequencing (scRNA‐seq) has advantages over traditional
RNA‐seq to explore spatiotemporal information on gene dynamic expressions in …
RNA‐seq to explore spatiotemporal information on gene dynamic expressions in …
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