Integrative approaches for species delimitation in Ascomycota

SSN Maharachchikumbura, Y Chen, HA Ariyawansa… - Fungal Diversity, 2021 - Springer
Biodiversity loss from disturbances caused by human activities means that species are
disappearing at an ever increasing rate. The high number of species that have yet to be …

What are fungal species and how to delineate them?

KWT Chethana, IS Manawasinghe, VG Hurdeal… - Fungal Diversity, 2021 - Springer
This is the opening paper in the special issue of Fungal Diversity, which collates the data on
defining species. Defining and recognizing species has long been a controversial issue …

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

CL Schoch, GH Sung, F López-Giráldez… - Systematic …, 2009 - academic.oup.com
Abstract We present a 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota,
the largest phylum of Fungi. This analysis is the most taxonomically complete to date with …

A phylogenomic analysis of the Ascomycota

B Robbertse, JB Reeves, CL Schoch… - Fungal genetics and …, 2006 - Elsevier
An automated procedure was developed to extract orthologous sequences from fungal
genomes and incorporate them into phylogenomic analyses in a timely and efficient manner …

The ranking of fungi: a tribute to David L. Hawksworth on his 70th birthday

KD Hyde, SSN Maharachchikumbura, S Hongsanan… - Fungal diversity, 2017 - Springer
The history of assigning ranks to fungi, as well as the relative importance of using
divergence time estimates is reviewed. The paper pays tribute to the major mycological …

The numbers of fungi: Contributions from traditional taxonomic studies and challenges of metabarcoding

C Phukhamsakda, RH Nilsson, CS Bhunjun… - Fungal diversity, 2022 - Springer
The global diversity of fungi has been estimated using several different approaches. There is
somewhere between 2–11 million estimated species, but the number of formally described …

Fungal species concepts in the genomics era

J Xu - Genome, 2020 - cdnsciencepub.com
The 140 000 or so fungal species reported so far are heterogeneously defined based on
varying criteria such as morphological, physiological, mating, and (or) molecular features …

Improving taxonomic delimitation of fungal species in the age of genomics and phenomics

A Stengel, KM Stanke, AC Quattrone… - Frontiers in …, 2022 - frontiersin.org
Species concepts have long provided a source of debate among biologists. These lively
debates have been important for reaching consensus on how to communicate across …

Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits

F Lutzoni, F Kauff, CJ Cox, D McLaughlin… - American journal of …, 2004 - Wiley Online Library
Based on an overview of progress in molecular systematics of the true fungi
(Fungi/Eumycota) since 1990, little overlap was found among single‐locus data matrices …

[HTML][HTML] Fungal species boundaries in the genomics era

DR Matute, VE Sepúlveda - Fungal Genetics and Biology, 2019 - Elsevier
Genomic data has opened new possibilities to understand how organisms change over
time, and could enable the discovery of previously undescribed species. Although taxonomy …