Deciphering Pleiotropic Signatures of Regulatory SNPs in Zea mays L. Using Multi-Omics Data and Machine Learning Algorithms
Maize is one of the most widely grown cereals in the world. However, to address the
challenges in maize breeding arising from climatic anomalies, there is a need for developing …
challenges in maize breeding arising from climatic anomalies, there is a need for developing …
In Silico Identification of the Complex Interplay between Regulatory SNPs, Transcription Factors, and Their Related Genes in Brassica napus L. Using Multi-Omics …
Regulatory SNPs (rSNPs) are a special class of SNPs which have a high potential to affect
the phenotype due to their impact on DNA-binding of transcription factors (TFs). Thus, the …
the phenotype due to their impact on DNA-binding of transcription factors (TFs). Thus, the …
Transcriptome-Wide Association Supplements Genome-Wide Association in Zea mays
KAG Kremling, CH Diepenbrock… - G3: Genes …, 2019 - academic.oup.com
Modern improvement of complex traits in agricultural species relies on successful
associations of heritable molecular variation with observable phenotypes. Historically, this …
associations of heritable molecular variation with observable phenotypes. Historically, this …
Elucidating the patterns of pleiotropy and its biological relevance in maize
Pleiotropy—when a single gene controls two or more seemingly unrelated traits—has been
shown to impact genes with effects on flowering time, leaf architecture, and inflorescence …
shown to impact genes with effects on flowering time, leaf architecture, and inflorescence …
Transcriptome reveals allele contribution to heterosis in maize
J Wu, D Sun, Q Zhao, H Yong, D Zhang… - Frontiers in Plant …, 2021 - frontiersin.org
Heterosis, which has greatly increased maize yields, is associated with gene expression
patterns during key developmental stages that enhance hybrid phenotypes relative to …
patterns during key developmental stages that enhance hybrid phenotypes relative to …
Advancements and prospects of genome-wide association studies (GWAS) in maize
JH Sahito, H Zhang, ZGN Gishkori, C Ma… - International Journal of …, 2024 - mdpi.com
Genome-wide association studies (GWAS) have emerged as a powerful tool for unraveling
intricate genotype–phenotype association across various species. Maize (Zea mays L.) …
intricate genotype–phenotype association across various species. Maize (Zea mays L.) …
MaizeNet: a co‐functional network for network‐assisted systems genetics in Zea mays
Maize (Zea mays) has multiple uses in human food, animal fodder, starch and sweetener
production and as a biofuel, and is accordingly the most extensively cultivated cereal …
production and as a biofuel, and is accordingly the most extensively cultivated cereal …
Multi-trait genome-wide association studies reveal loci associated with maize inflorescence and leaf architecture
Maize inflorescence is a complex phenotype that involves the physical and developmental
interplay of multiple traits. Given the evidence that genes could pleiotropically contribute to …
interplay of multiple traits. Given the evidence that genes could pleiotropically contribute to …
Phenomic data-driven biological prediction of maize through field-based high-throughput phenotyping integration with genomic data
High-throughput phenotyping (HTP) has expanded the dimensionality of data in plant
research; however, HTP has resulted in few novel biological discoveries to date. Field …
research; however, HTP has resulted in few novel biological discoveries to date. Field …
Structural variants contribute to phenotypic variation in maize
Comprehensively identifying the loci shaping trait variation has been challenging, in part
because standard approaches often miss many types of genetic variants. Structural variants …
because standard approaches often miss many types of genetic variants. Structural variants …