Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain

BB Lake, S Chen, BC Sos, J Fan, GE Kaeser… - Nature …, 2018 - nature.com
Detailed characterization of the cell types in the human brain requires scalable experimental
approaches to examine multiple aspects of the molecular state of individual cells, as well as …

Single-cell sequencing of brain cell transcriptomes and epigenomes

EJ Armand, J Li, F Xie, C Luo, EA Mukamel - Neuron, 2021 - cell.com
Single-cell sequencing technologies, including transcriptomic and epigenomic assays, are
transforming our understanding of the cellular building blocks of neural circuits. By directly …

Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility

CA Lareau, FM Duarte, JG Chew, VK Kartha… - Nature …, 2019 - nature.com
Recent technical advancements have facilitated the mapping of epigenomes at single-cell
resolution; however, the throughput and quality of these methods have limited their …

High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell

S Chen, BB Lake, K Zhang - Nature biotechnology, 2019 - nature.com
Single-cell RNA sequencing can reveal the transcriptional state of cells, yet provides little
insight into the upstream regulatory landscape associated with open or accessible …

Single-cell CUT&Tag profiles histone modifications and transcription factors in complex tissues

M Bartosovic, M Kabbe, G Castelo-Branco - Nature biotechnology, 2021 - nature.com
In contrast to single-cell approaches for measuring gene expression and DNA accessibility,
single-cell methods for analyzing histone modifications are limited by low sensitivity and …

Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus RNA-seq

P Hu, E Fabyanic, DY Kwon, S Tang, Z Zhou, H Wu - Molecular cell, 2017 - cell.com
Massively parallel single-cell RNA sequencing can precisely resolve cellular diversity in a
high-throughput manner at low cost, but unbiased isolation of intact single cells from …

[HTML][HTML] Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets

EZ Macosko, A Basu, R Satija, J Nemesh, K Shekhar… - Cell, 2015 - cell.com
Cells, the basic units of biological structure and function, vary broadly in type and state.
Single-cell genomics can characterize cell identity and function, but limitations of ease and …

Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding

AB Rosenberg, CM Roco, RA Muscat, A Kuchina… - Science, 2018 - science.org
To facilitate scalable profiling of single cells, we developed split-pool ligation-based
transcriptome sequencing (SPLiT-seq), a single-cell RNA-seq (scRNA-seq) method that …

STRT-seq-2i: dual-index 5ʹ single cell and nucleus RNA-seq on an addressable microwell array

H Hochgerner, P Lönnerberg, R Hodge, J Mikes… - Scientific reports, 2017 - nature.com
Single-cell RNA-seq has become routine for discovering cell types and revealing cellular
diversity, but archived human brain samples still pose a challenge to current high …

Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2

RR Stickels, E Murray, P Kumar, J Li, JL Marshall… - Nature …, 2021 - nature.com
Measurement of the location of molecules in tissues is essential for understanding tissue
formation and function. Previously, we developed Slide-seq, a technology that enables …