Pacbio HiFi sequencing sheds light on key bacteria contributing to deadwood decomposition processes

E Richy, PT Dobbler, V Tláskal, R López-Mondéjar… - 2024 - researchsquare.com
Background In forest ecosystems, biological decomposition of deadwood components plays
a pivotal role in nutrient cycling and in carbon storage by enriching soils with organic matter …

Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood

V Tláskal, V Brabcová, T Větrovský, R López-Mondéjar… - Scientific data, 2021 - nature.com
Deadwood represents significant carbon (C) stock in a temperate forests. Its decomposition
and C mobilization is accomplished by decomposer microorganisms–fungi and bacteria …

Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood

T Vojtěch, B Vendula, V Tomáš, LM Rubén… - Scientific …, 2021 - search.proquest.com
Deadwood represents significant carbon (C) stock in a temperate forests. Its decomposition
and C mobilization is accomplished by decomposer microorganisms–fungi and bacteria …

Bacteria associated with decomposing deadwood

V Tláskal - 2021 - dspace.cuni.cz
Deadwood is a hotspot of microbial diversity and its decomposition contributes to carbon
and nitrogen cycling in temperate forests. The historically recognized importance of fungi in …

Deadwood-inhabiting bacteria show adaptations to changing carbon and nitrogen availability during decomposition

V Tláskal, P Baldrian - Frontiers in Microbiology, 2021 - frontiersin.org
Deadwood decomposition is responsible for a significant amount of carbon (C) turnover in
natural forests. While fresh deadwood contains mainly plant compounds and is extremely …

Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay

H Hage, S Miyauchi, M Virágh, E Drula… - Environmental …, 2021 - Wiley Online Library
Because they comprise some of the most efficient wood‐decayers, Polyporales fungi impact
carbon cycling in forest environment. Despite continuous discoveries on the enzymatic …

Evaluation of primers for the detection of deadwood-inhabiting archaea via amplicon sequencing

J Moll, B Hoppe - PeerJ, 2022 - peerj.com
Archaea have been reported from deadwood of a few different tree species in temperate and
boreal forest ecosystems in the past. However, while one of their functions is well linked to …

The metagenome of an anaerobic microbial community decomposing poplar wood chips

D van der Lelie, S Taghavi, SM McCorkle, LL Li… - PloS one, 2012 - journals.plos.org
This study describes the composition and metabolic potential of a lignocellulosic biomass
degrading community that decays poplar wood chips under anaerobic conditions. We …

Complementary roles of wood-inhabiting fungi and bacteria facilitate deadwood decomposition

V Tláskal, V Brabcová, T Větrovský, M Jomura… - Msystems, 2021 - Am Soc Microbiol
Forests accumulate and store large amounts of carbon (C), and a substantial fraction of this
stock is contained in deadwood. This transient pool is subject to decomposition by …

Bacteria inhabiting deadwood of 13 tree species are heterogeneously distributed between sapwood and heartwood

J Moll, H Kellner, S Leonhardt, E Stengel… - Environmental …, 2018 - Wiley Online Library
Deadwood represents an important structural component of forest ecosystems, where it
provides diverse niches for saproxylic biota. Although wood‐inhabiting prokaryotes are …