[HTML][HTML] Weighting strategies for single-step genomic BLUP: an iterative approach for accurate calculation of GEBV and GWAS

X Zhang, D Lourenco, I Aguilar, A Legarra… - Frontiers in …, 2016 - frontiersin.org
Genomic Best Linear Unbiased Predictor (GBLUP) assumes equal variance for all single
nucleotide polymorphisms (SNP). When traits are influenced by major SNP, Bayesian …

[HTML][HTML] Including dominance effects in the genomic BLUP method for genomic evaluation

M Nishio, M Satoh - PloS one, 2014 - journals.plos.org
We evaluated the performance of GBLUP including dominance genetic effect (GBLUP-D) by
estimating variances and predicting genetic merits in a computer simulation and 2 actual …

[HTML][HTML] Single-step genomic evaluations from theory to practice: using SNP chips and sequence data in BLUPF90

D Lourenco, A Legarra, S Tsuruta, Y Masuda, I Aguilar… - Genes, 2020 - mdpi.com
Single-step genomic evaluation became a standard procedure in livestock breeding, and
the main reason is the ability to combine all pedigree, phenotypes, and genotypes available …

[HTML][HTML] Comparison of genomic predictions for lowly heritable traits using multi-step and single-step genomic best linear unbiased predictor in Holstein cattle

AR Guarini, DAL Lourenco, LF Brito, M Sargolzaei… - Journal of dairy …, 2018 - Elsevier
The success and sustainability of a breeding program incorporating genomic information is
largely dependent on the accuracy of predictions. For low heritability traits, large training …

[HTML][HTML] Invited review: efficient computation strategies in genomic selection

I Misztal, A Legarra - Animal, 2017 - Elsevier
The purpose of this study is review and evaluation of computing methods used in genomic
selection for animal breeding. Commonly used models include SNP BLUP with extensions …

Genomic BLUP decoded: a look into the black box of genomic prediction

D Habier, RL Fernando, DJ Garrick - Genetics, 2013 - academic.oup.com
Genomic best linear unbiased prediction (BLUP) is a statistical method that uses
relationships between individuals calculated from single-nucleotide polymorphisms (SNPs) …

[HTML][HTML] Incorporation of causative quantitative trait nucleotides in single-step GBLUP

BO Fragomeni, DAL Lourenco, Y Masuda… - Genetics Selection …, 2017 - Springer
Background Much effort is put into identifying causative quantitative trait nucleotides (QTN)
in animal breeding, empowered by the availability of dense single nucleotide polymorphism …

Comparison of genomic and traditional BLUP‐estimated breeding value accuracy and selection response under alternative trait and genomic parameters

WM Muir - Journal of Animal Breeding and Genetics, 2007 - Wiley Online Library
Accuracy of prediction of estimated breeding values based on genome‐wide markers
(GEBV) and selection based on GEBV as compared with traditional Best Linear Unbiased …

[HTML][HTML] Weighted single-step genomic BLUP improves accuracy of genomic breeding values for protein content in French dairy goats: A quantitative trait influenced …

M Teissier, H Larroque, C Robert-Granié - Genetics Selection Evolution, 2018 - Springer
Background In 2017, genomic selection was implemented in French dairy goats using the
single-step genomic best linear unbiased prediction (ssGBLUP) method, which assumes …

Genomic prediction using multi-trait weighted GBLUP accounting for heterogeneous variances and covariances across the genome

E Karaman, MS Lund, MT Anche… - G3: Genes, Genomes …, 2018 - academic.oup.com
Implicit assumption of common (co) variance for all loci in multi-trait Genomic Best Linear
Unbiased Prediction (GBLUP) results in a genomic relationship matrix (G) that is common to …