[HTML][HTML] An online coronavirus analysis platform from the National Genomics Data Center

Z Gong, JW Zhu, CP Li, S Jiang, LN Ma… - Zoological …, 2020 - ncbi.nlm.nih.gov
Since the first reported severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
infection in December 2019, coronavirus disease 2019 (COVID-19) has become a global …

The 2019 novel coronavirus resource.

WM Zhao, SH Song, ML Chen, D Zou, LN Ma… - Yi chuan …, 2020 - europepmc.org
An ongoing outbreak of a novel coronavirus infection in Wuhan, China since December
2019 has led to 31,516 infected persons and 638 deaths across 25 countries (till 16: 00 on …

The global landscape of SARS-CoV-2 genomes, variants, and haplotypes in 2019nCoVR

S Song, L Ma, D Zou, D Tian, C Li, J Zhu… - Genomics …, 2020 - academic.oup.com
Abstract On January 22, 2020, China National Center for Bioinformation (CNCB) released
the 2019 Novel Coronavirus Resource (2019nCoVR), an open-access information resource …

Coronavirus GenBrowser for monitoring the transmission and evolution of SARS-CoV-2

D Yu, X Yang, B Tang, YH Pan, J Yang… - Briefings in …, 2022 - academic.oup.com
Genomic epidemiology is important to study the COVID-19 pandemic, and more than two
million severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genomic sequences …

Global landscape of SARS-CoV-2 mutations and conserved regions

MH Abbasian, M Mahmanzar, K Rahimian… - Journal of Translational …, 2023 - Springer
Background At the end of December 2019, a novel strain of Severe Acute Respiratory
Syndrome Coronavirus 2 (SARS-CoV-2) disease (COVID-19) has been identified in Wuhan …

Bioinformatics resources for SARS-CoV-2 discovery and surveillance

T Hu, J Li, H Zhou, C Li, EC Holmes… - Briefings in …, 2021 - academic.oup.com
In early January 2020, the novel coronavirus (SARS-CoV-2) responsible for a pneumonia
outbreak in Wuhan, China, was identified using next-generation sequencing (NGS) and …

[HTML][HTML] Evolutionary analysis and lineage designation of SARS-CoV-2 genomes

X Tang, R Ying, X Yao, G Li, C Wu, Y Tang, Z Li… - Science bulletin, 2021 - Elsevier
The pandemic due to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2),
the etiological agent of coronavirus disease 2019 (COVID-19), has caused immense global …

[HTML][HTML] GISAID's role in pandemic response

S Khare, C Gurry, L Freitas, MB Schultz, G Bach… - China CDC …, 2021 - ncbi.nlm.nih.gov
GISAID is a global data science initiative and the primary source of genomic and associated
metadata of all influenza viruses, Respiratory Syncytial Virus (RSV) and severe acute …

Controlling the SARS-CoV-2 outbreak, insights from large scale whole genome sequences generated across the world

J Phelan, W Deelder, D Ward, S Campino, ML Hibberd… - BioRxiv, 2020 - biorxiv.org
Background SARS-CoV-2 most likely evolved from a bat beta-coronavirus and started
infecting humans in December 2019. Since then it has rapidly infected people around the …

HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences

PT Truong Nguyen, I Plyusnin, T Sironen… - BMC …, 2021 - Springer
Background SARS-CoV-2 related research has increased in importance worldwide since
December 2019. Several new variants of SARS-CoV-2 have emerged globally, of which the …