Fungal diversity revisited: 2.2 to 3.8 million species

DL Hawksworth, R Lücking - Microbiology spectrum, 2017 - Am Soc Microbiol
The question of how many species of Fungi there are has occasioned much speculation,
with figures mostly posited from around half a million to 10 million, and in one extreme case …

One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes

JB Stielow, CA Levesque, KA Seifert… - … and Evolution of …, 2015 - ingentaconnect.com
The aim of this study was to assess potential candidate gene regions and corresponding
universal primer pairs as secondary DNA barcodes for the fungal kingdom, additional to ITS …

[HTML][HTML] Improving taxonomic delimitation of fungal species in the age of genomics and phenomics

A Stengel, KM Stanke, AC Quattrone… - Frontiers in …, 2022 - frontiersin.org
Species concepts have long provided a source of debate among biologists. These lively
debates have been important for reaching consensus on how to communicate across …

[HTML][HTML] The numbers of fungi: Contributions from traditional taxonomic studies and challenges of metabarcoding

C Phukhamsakda, RH Nilsson, CS Bhunjun… - Fungal diversity, 2022 - Springer
The global diversity of fungi has been estimated using several different approaches. There is
somewhere between 2–11 million estimated species, but the number of formally described …

[HTML][HTML] Identification of fungi in shotgun metagenomics datasets

PD Donovan, G Gonzalez, DG Higgins, G Butler, K Ito - PloS one, 2018 - journals.plos.org
Metagenomics uses nucleic acid sequencing to characterize species diversity in different
niches such as environmental biomes or the human microbiome. Most studies have used …

More protist genomes needed

SJ Sibbald, JM Archibald - Nature ecology & evolution, 2017 - nature.com
DNA sequencing is faster and cheaper than ever before but quantity does not necessarily
mean quality. Towards a comprehensive understanding of the microbial biosphere, we need …

Improving ITS sequence data for identification of plant pathogenic fungi

RH Nilsson, KD Hyde, J Pawłowska, M Ryberg… - Fungal Diversity, 2014 - Springer
Plant pathogenic fungi are a large and diverse assemblage of eukaryotes with substantial
impacts on natural ecosystems and human endeavours. These taxa often have complex and …

A consistent phylogenetic backbone for the fungi

I Ebersberger, R de Matos Simoes… - Molecular Biology …, 2012 - academic.oup.com
The kingdom of fungi provides model organisms for biotechnology, cell biology, genetics,
and life sciences in general. Only when their phylogenetic relationships are stably resolved …

[HTML][HTML] Analysis of sequencing strategies and tools for taxonomic annotation: defining standards for progressive metagenomics

A Escobar-Zepeda, EE Godoy-Lozano, L Raggi… - Scientific reports, 2018 - nature.com
Metagenomics research has recently thrived due to DNA sequencing technologies
improvement, driving the emergence of new analysis tools and the growth of taxonomic …

MycoCosm portal: gearing up for 1000 fungal genomes

IV Grigoriev, R Nikitin, S Haridas, A Kuo… - Nucleic acids …, 2014 - academic.oup.com
MycoCosm is a fungal genomics portal (http://jgi. doe. gov/fungi), developed by the US
Department of Energy Joint Genome Institute to support integration, analysis and …