Fungal diversity revisited: 2.2 to 3.8 million species
DL Hawksworth, R Lücking - Microbiology spectrum, 2017 - Am Soc Microbiol
The question of how many species of Fungi there are has occasioned much speculation,
with figures mostly posited from around half a million to 10 million, and in one extreme case …
with figures mostly posited from around half a million to 10 million, and in one extreme case …
One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes
The aim of this study was to assess potential candidate gene regions and corresponding
universal primer pairs as secondary DNA barcodes for the fungal kingdom, additional to ITS …
universal primer pairs as secondary DNA barcodes for the fungal kingdom, additional to ITS …
[HTML][HTML] Improving taxonomic delimitation of fungal species in the age of genomics and phenomics
A Stengel, KM Stanke, AC Quattrone… - Frontiers in …, 2022 - frontiersin.org
Species concepts have long provided a source of debate among biologists. These lively
debates have been important for reaching consensus on how to communicate across …
debates have been important for reaching consensus on how to communicate across …
[HTML][HTML] The numbers of fungi: Contributions from traditional taxonomic studies and challenges of metabarcoding
The global diversity of fungi has been estimated using several different approaches. There is
somewhere between 2–11 million estimated species, but the number of formally described …
somewhere between 2–11 million estimated species, but the number of formally described …
[HTML][HTML] Identification of fungi in shotgun metagenomics datasets
Metagenomics uses nucleic acid sequencing to characterize species diversity in different
niches such as environmental biomes or the human microbiome. Most studies have used …
niches such as environmental biomes or the human microbiome. Most studies have used …
More protist genomes needed
SJ Sibbald, JM Archibald - Nature ecology & evolution, 2017 - nature.com
DNA sequencing is faster and cheaper than ever before but quantity does not necessarily
mean quality. Towards a comprehensive understanding of the microbial biosphere, we need …
mean quality. Towards a comprehensive understanding of the microbial biosphere, we need …
Improving ITS sequence data for identification of plant pathogenic fungi
Plant pathogenic fungi are a large and diverse assemblage of eukaryotes with substantial
impacts on natural ecosystems and human endeavours. These taxa often have complex and …
impacts on natural ecosystems and human endeavours. These taxa often have complex and …
A consistent phylogenetic backbone for the fungi
I Ebersberger, R de Matos Simoes… - Molecular Biology …, 2012 - academic.oup.com
The kingdom of fungi provides model organisms for biotechnology, cell biology, genetics,
and life sciences in general. Only when their phylogenetic relationships are stably resolved …
and life sciences in general. Only when their phylogenetic relationships are stably resolved …
[HTML][HTML] Analysis of sequencing strategies and tools for taxonomic annotation: defining standards for progressive metagenomics
Metagenomics research has recently thrived due to DNA sequencing technologies
improvement, driving the emergence of new analysis tools and the growth of taxonomic …
improvement, driving the emergence of new analysis tools and the growth of taxonomic …
MycoCosm portal: gearing up for 1000 fungal genomes
IV Grigoriev, R Nikitin, S Haridas, A Kuo… - Nucleic acids …, 2014 - academic.oup.com
MycoCosm is a fungal genomics portal (http://jgi. doe. gov/fungi), developed by the US
Department of Energy Joint Genome Institute to support integration, analysis and …
Department of Energy Joint Genome Institute to support integration, analysis and …