10KP: A phylodiverse genome sequencing plan
Understanding plant evolution and diversity in a phylogenomic context is an enormous
challenge due, in part, to limited availability of genome-scale data across phylodiverse …
challenge due, in part, to limited availability of genome-scale data across phylodiverse …
GenBank is a reliable resource for 21st century biodiversity research
M Leray, N Knowlton, SL Ho… - Proceedings of the …, 2019 - National Acad Sciences
Traditional methods of characterizing biodiversity are increasingly being supplemented and
replaced by approaches based on DNA sequencing alone. These approaches commonly …
replaced by approaches based on DNA sequencing alone. These approaches commonly …
Fungal DNA barcoding
J Xu - Genome, 2016 - cdnsciencepub.com
Fungi are ubiquitous in both natural and human-made environments. They play important
roles in the health of plants, animals, and humans, and in broad ecosystem functions. Thus …
roles in the health of plants, animals, and humans, and in broad ecosystem functions. Thus …
New primers to amplify the fungal ITS2 region–evaluation by 454-sequencing of artificial and natural communities
K Ihrmark, ITM Bödeker, K Cruz-Martinez… - FEMS microbiology …, 2012 - academic.oup.com
With recent methodological advances, molecular markers are increasingly used for semi-
quantitative analyses of fungal communities. The aim to preserve quantitative relationships …
quantitative analyses of fungal communities. The aim to preserve quantitative relationships …
Fungarium specimens: a largely untapped source in global change biology and beyond
For several hundred years, millions of fungal sporocarps have been collected and deposited
in worldwide collections (fungaria) to support fungal taxonomy. Owing to large-scale …
in worldwide collections (fungaria) to support fungal taxonomy. Owing to large-scale …
ITS 1 versus ITS 2 as DNA metabarcodes for fungi
R Blaalid, S Kumar, RH Nilsson… - Molecular ecology …, 2013 - Wiley Online Library
Abstract The nuclear ribosomal Internal Transcribed Spacer ITS region is widely used as a
DNA metabarcoding marker to characterize the diversity and composition of fungal …
DNA metabarcoding marker to characterize the diversity and composition of fungal …
Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi
The rDNA internal transcribed spacer (ITS) region has been accepted as a DNA barcoding
marker for fungi and is widely used in phylogenetic studies; however, intragenomic ITS …
marker for fungi and is widely used in phylogenetic studies; however, intragenomic ITS …
Tissue storage and primer selection influence pyrosequencing‐based inferences of diversity and community composition of endolichenic and endophytic fungi
JM U'Ren, JM Riddle, JT Monacell… - Molecular Ecology …, 2014 - Wiley Online Library
Next‐generation sequencing technologies have provided unprecedented insights into
fungal diversity and ecology. However, intrinsic biases and insufficient quality control in next …
fungal diversity and ecology. However, intrinsic biases and insufficient quality control in next …
Optimized metabarcoding with Pacific biosciences enables semi‐quantitative analysis of fungal communities
Recent studies have questioned the use of high‐throughput sequencing of the nuclear
ribosomal internal transcribed spacer (ITS) region to derive a semi‐quantitative …
ribosomal internal transcribed spacer (ITS) region to derive a semi‐quantitative …
A genome-scale phylogeny of the kingdom Fungi
Phylogenomic studies using genome-scale amounts of data have greatly improved
understanding of the tree of life. Despite the diversity, ecological significance, and …
understanding of the tree of life. Despite the diversity, ecological significance, and …