Using phylogenomics to resolve mega‐families: An example from Compositae

JR Mandel, RB Dikow, VA Funk - Journal of systematics and …, 2015 - Wiley Online Library
Next‐generation sequencing and phylogenomics hold great promise for elucidating
complex relationships among large plant families. Here, we performed targeted capture of …

The Compositae tree of life in the age of phylogenomics

JR Mandel, MS Barker, RJ Bayer… - … of Systematics and …, 2017 - Wiley Online Library
Comprising more than 25 000 species, the Sunflower Family (Compositae or Asteraceae) is
the largest family of flowering plants. Many of its lineages have experienced recent and …

A target enrichment method for gathering phylogenetic information from hundreds of loci: an example from the Compositae

JR Mandel, RB Dikow, VA Funk… - Applications in plant …, 2014 - Wiley Online Library
• Premise of the study: The Compositae (Asteraceae) are a large and diverse family of
plants, and the most comprehensive phylogeny to date is a meta‐tree based on 10 …

Compositae‐ParaLoss‐1272: A complementary sunflower‐specific probe set reduces paralogs in phylogenomic analyses of complex systems

ER Moore‐Pollard, DS Jones… - Applications in Plant …, 2024 - Wiley Online Library
Premise A family‐specific probe set for sunflowers, Compositae‐1061, enables family‐wide
phylogenomic studies and investigations at lower taxonomic levels, but may lack resolution …

Genome‐scale angiosperm phylogenies based on nuclear, plastome, and mitochondrial datasets

H Hu, P Sun, Y Yang, J Ma, J Liu - Journal of Integrative Plant …, 2023 - Wiley Online Library
Angiosperms dominate the Earth's ecosystems and provide most of the basic necessities for
human life. The major angiosperm clades comprise 64 orders, as recognized by the APG IV …

Lineage‐specific vs. universal: A comparison of the Compositae1061 and Angiosperms353 enrichment panels in the sunflower family

CM Siniscalchi, O Hidalgo, L Palazzesi… - Applications in Plant …, 2021 - Wiley Online Library
Premise Phylogenetic studies in the Compositae are challenging due to the sheer size of the
family and the challenges they pose for molecular tools, ranging from the genomic impact of …

Phylotranscriptomics of Theaceae: generic-level relationships, reticulation and whole-genome duplication

Q Zhang, L Zhao, RA Folk, JL Zhao… - Annals of …, 2022 - academic.oup.com
Abstract Background and Aims Theaceae, with three tribes, nine genera and more than 200
species, are of great economic and ecological importance. Recent phylogenetic analyses …

Nuclear phylogenomics of Asteraceae with increased sampling provides new insights into convergent morphological and molecular evolution

G Zhang, J Yang, C Zhang, B Jiao, JL Panero, J Cai… - Plant …, 2024 - cell.com
Convergent morphological evolution is widespread in flowering plants, and understanding
this phenomenon relies on well-resolved phylogenies. Nuclear phylogenetic reconstruction …

[PDF][PDF] Asterid phylogenomics/phylotranscriptomics uncover morphological evolutionary histories and support phylogenetic placement for numerous whole-genome …

C Zhang, T Zhang, F Luebert, Y Xiang… - Molecular biology …, 2020 - academic.oup.com
Asterids are one of the most successful angiosperm lineages, exhibiting extensive
morphological diversity and including a number of important crops. Despite their biological …

A comprehensive phylogenomic study of the monocot order Commelinales, with a new classification of Commelinaceae

AR Zuntini, LP Frankel, L Pokorny… - American Journal of …, 2021 - Wiley Online Library
Premise Resolving relationships within order Commelinales has posed quite a challenge,
as reflected in its unstable infra‐familial classification. Thus, we investigated (1) …