Development of chromosome-specific markers with high polymorphism for allotetraploid cotton based on genome-wide characterization of simple sequence repeats in …

C Lu, C Zou, Y Zhang, D Yu, H Cheng, P Jiang… - BMC genomics, 2015 - Springer
Background Tetraploid cotton contains two sets of homologous chromosomes, the At-and Dt-
subgenomes. Consequently, many markers in cotton were mapped to multiple positions …

Toward allotetraploid cotton genome assembly: integration of a high-density molecular genetic linkage map with DNA sequence information

L Zhao, L Yuanda, C Caiping, T Xiangchao… - BMC genomics, 2012 - Springer
Background Cotton is the world's most important natural textile fiber and a significant oilseed
crop. Decoding cotton genomes will provide the ultimate reference and resource for …

Transcriptome analysis of extant cotton progenitors revealed tetraploidization and identified genome-specific single nucleotide polymorphism in diploid and …

X Guan, G Nah, Q Song, JA Udall, DM Stelly… - BMC research …, 2014 - Springer
Background The most widely cultivated cotton (Gossypium hirsutum L., AD-genome) is
derived from tetraploidization between A-and D-genome species. G. arboreum L.(A …

Molecular mapping of restriction-site associated DNA markers in allotetraploid upland cotton

Y Wang, Z Ning, Y Hu, J Chen, R Zhao, H Chen, N Ai… - PLoS …, 2015 - journals.plos.org
Upland cotton (Gossypium hirsutum L., 2n= 52, AADD) is an allotetraploid, therefore the
discovery of single nucleotide polymorphism (SNP) markers is difficult. The recent …

Development and mapping of SNP assays in allotetraploid cotton

RL Byers, DB Harker, SM Yourstone… - Theoretical and Applied …, 2012 - Springer
A narrow germplasm base and a complex allotetraploid genome have made the discovery of
single nucleotide polymorphism (SNP) markers difficult in cotton (Gossypium hirsutum). To …

Characteristics and analysis of simple sequence repeats in the cotton genome based on a linkage map constructed from a BC1 population between Gossypium …

Y Zhang, Z Lin, Q Xia, M Zhang, X Zhang - Genome, 2008 - cdnsciencepub.com
In the past decade, several molecular maps of cotton have been constructed using diverse
DNA molecular markers and mapping populations. In this study, an interspecific linkage map …

Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes

S Wang, J Chen, W Zhang, Y Hu, L Chang, L Fang… - Genome biology, 2015 - Springer
Background SNPs are the most abundant polymorphism type, and have been explored in
many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton …

A Gossypium BAC clone contains key repeat components distinguishing sub-genome of allotetraploidy cottons

Y Liu, R Peng, F Liu, X Wang, X Cui, Z Zhou… - Molecular …, 2016 - Springer
Background Dissecting genome organization is indispensable for further functional and
applied studies. As genome sequences data shown, cotton genomes contain more than …

Uncovering SNP and indel variations of tetraploid cottons by SLAF-seq

C Shen, X Jin, D Zhu, Z Lin - BMC genomics, 2017 - Springer
Abstract Background Cotton (Gossypium spp.), as the world's most utilized textile fibre
source, is an important, economically valuable crop worldwide. Understanding the genomic …

BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic …

AM Hulse-Kemp, H Ashrafi, K Stoffel… - G3: Genes …, 2015 - academic.oup.com
A bacterial artificial chromosome library and BAC-end sequences for cultivated cotton
(Gossypium hirsutum L.) have recently been developed. This report presents genome-wide …