Development of chromosome-specific markers with high polymorphism for allotetraploid cotton based on genome-wide characterization of simple sequence repeats in …
C Lu, C Zou, Y Zhang, D Yu, H Cheng, P Jiang… - BMC genomics, 2015 - Springer
Background Tetraploid cotton contains two sets of homologous chromosomes, the At-and Dt-
subgenomes. Consequently, many markers in cotton were mapped to multiple positions …
subgenomes. Consequently, many markers in cotton were mapped to multiple positions …
Toward allotetraploid cotton genome assembly: integration of a high-density molecular genetic linkage map with DNA sequence information
Background Cotton is the world's most important natural textile fiber and a significant oilseed
crop. Decoding cotton genomes will provide the ultimate reference and resource for …
crop. Decoding cotton genomes will provide the ultimate reference and resource for …
Transcriptome analysis of extant cotton progenitors revealed tetraploidization and identified genome-specific single nucleotide polymorphism in diploid and …
Background The most widely cultivated cotton (Gossypium hirsutum L., AD-genome) is
derived from tetraploidization between A-and D-genome species. G. arboreum L.(A …
derived from tetraploidization between A-and D-genome species. G. arboreum L.(A …
Molecular mapping of restriction-site associated DNA markers in allotetraploid upland cotton
Y Wang, Z Ning, Y Hu, J Chen, R Zhao, H Chen, N Ai… - PLoS …, 2015 - journals.plos.org
Upland cotton (Gossypium hirsutum L., 2n= 52, AADD) is an allotetraploid, therefore the
discovery of single nucleotide polymorphism (SNP) markers is difficult. The recent …
discovery of single nucleotide polymorphism (SNP) markers is difficult. The recent …
Development and mapping of SNP assays in allotetraploid cotton
RL Byers, DB Harker, SM Yourstone… - Theoretical and Applied …, 2012 - Springer
A narrow germplasm base and a complex allotetraploid genome have made the discovery of
single nucleotide polymorphism (SNP) markers difficult in cotton (Gossypium hirsutum). To …
single nucleotide polymorphism (SNP) markers difficult in cotton (Gossypium hirsutum). To …
Characteristics and analysis of simple sequence repeats in the cotton genome based on a linkage map constructed from a BC1 population between Gossypium …
Y Zhang, Z Lin, Q Xia, M Zhang, X Zhang - Genome, 2008 - cdnsciencepub.com
In the past decade, several molecular maps of cotton have been constructed using diverse
DNA molecular markers and mapping populations. In this study, an interspecific linkage map …
DNA molecular markers and mapping populations. In this study, an interspecific linkage map …
Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes
S Wang, J Chen, W Zhang, Y Hu, L Chang, L Fang… - Genome biology, 2015 - Springer
Background SNPs are the most abundant polymorphism type, and have been explored in
many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton …
many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton …
A Gossypium BAC clone contains key repeat components distinguishing sub-genome of allotetraploidy cottons
Background Dissecting genome organization is indispensable for further functional and
applied studies. As genome sequences data shown, cotton genomes contain more than …
applied studies. As genome sequences data shown, cotton genomes contain more than …
Uncovering SNP and indel variations of tetraploid cottons by SLAF-seq
C Shen, X Jin, D Zhu, Z Lin - BMC genomics, 2017 - Springer
Abstract Background Cotton (Gossypium spp.), as the world's most utilized textile fibre
source, is an important, economically valuable crop worldwide. Understanding the genomic …
source, is an important, economically valuable crop worldwide. Understanding the genomic …
BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic …
A bacterial artificial chromosome library and BAC-end sequences for cultivated cotton
(Gossypium hirsutum L.) have recently been developed. This report presents genome-wide …
(Gossypium hirsutum L.) have recently been developed. This report presents genome-wide …
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