Molecular modeling of an antigenic complex between a viral peptide and a class I major histocompatibility glycoprotein

D Rognan, MJ Reddehase… - Proteins: Structure …, 1992 - Wiley Online Library
Computer simulation of the conformations of short antigenic peptides (5–10 residues) either
free or bound to their receptor, the major histocompatibility complex (MHC)‐encoded …

Molecular dynamics simulation of MHC-peptide complexes as a tool for predicting potential T cell epitopes

D Rognan, L Scapozza, G Folkers, A Daser - Biochemistry, 1994 - ACS Publications
Revised Manuscript Received June 13, 1994® abstract: The class I major histocompatibility
complex-encoded HLA-B* 2705 protein was simulated in complex with six different peptides …

Crystal structure of the major histocompatibility complex class I H-2Kb molecule containing a single viral peptide: implications for peptide binding and T-cell receptor …

W Zhang, AC Young, M Imarai… - Proceedings of the …, 1992 - National Acad Sciences
To study the structure of a homogenous major histocompatibility complex (MHC) class I
molecule containing a single bound peptide, a complex of recombinant mouse H-2Kb, beta …

Endogenous peptides of a soluble major histocompatibility complex class I molecule, H-2Lds: sequence motif, quantitative binding, and molecular modeling of the …

M Corr, LF Boyd, SR Frankel, S Kozlowski… - The Journal of …, 1992 - rupress.org
To gain insight into the rules that govern the binding of endogenous and viral peptides to a
given major histocompatibility complex (MHC) class I molecule, we characterized the amino …

Computational determination of side chain specificity for pockets in class I MHC molecules

G Vasmatzis, C Zhang, JL Cornette, C DeLisi - Molecular immunology, 1996 - Elsevier
We show that a rapidly executable computational procedure provides the basis for a
predictive understanding of antigenic peptide side chain specificity, for binding to class I …

Examination of possible structural constraints of MHC‐binding peptides by assessment of their native structure within their source proteins

O Schueler‐Furman, Y Altuvia… - … : Structure, Function, and …, 2001 - Wiley Online Library
Antigenic peptides bind to major histocompatibility complex (MHC) molecules as a
prerequisite for their presentation to T cells. In this study, we investigate possible structural …

Immune recognition of viral antigens.

IA Wilson, RL Stanfield, DA Jewell… - Infectious agents and …, 1994 - europepmc.org
The response exhibited by the immune system to viral and other foreign antigens consists of
antibody-mediated and T cell-mediated immunity. Structural and molecular biological …

Modeling the interactions of a peptide-major histocompatibility class I ligand with its receptors. I. Recognition by two αβ T cell receptors

D Rognan, A Stryhn, L Fugger, S Lyngbæk… - Journal of computer …, 2000 - Springer
A three-dimensional model of the complex between an Influenza Hemagglutinin peptide, Ha
255− 262, and its restricting element, the mouse major histocompatibility complex (MHC) …

Physicochemical explanation of peptide binding to HLA‐A* 0201 major histocompatibility complex: a three‐dimensional quantitative structure‐activity relationship …

IA Doytchinova, DR Flower - Proteins: Structure, Function, and …, 2002 - Wiley Online Library
A three‐dimensional quantitative structure‐activity relationship method for the prediction of
peptide binding affinities to the MHC class I molecule HLA‐A* 0201 was developed by …

Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles

O Schueler-Furman, Y Altuvia, A Sette, H Margalit - Protein Science, 2000 - cambridge.org
Specific binding of antigenic peptides to major histocompatibility complex (MHC) class I
molecules is a prerequisite for their recognition by cytotoxic T-cells. Prediction of MHC …