[HTML][HTML] Global disparities in SARS-CoV-2 genomic surveillance

AF Brito, E Semenova, G Dudas, GW Hassler… - Nature …, 2022 - nature.com
Genomic sequencing is essential to track the evolution and spread of SARS-CoV-2, optimize
molecular tests, treatments, vaccines, and guide public health responses. To investigate the …

[HTML][HTML] Global landscape of SARS-CoV-2 genomic surveillance and data sharing

Z Chen, AS Azman, X Chen, J Zou, Y Tian, R Sun… - Nature …, 2022 - nature.com
Genomic surveillance has shaped our understanding of severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2) variants. We performed a global landscape analysis on SARS …

[HTML][HTML] SARS-CoV-2 diagnostic testing rates determine the sensitivity of genomic surveillance programs

AX Han, A Toporowski, JA Sacks, MD Perkins… - Nature Genetics, 2023 - nature.com
The first step in SARS-CoV-2 genomic surveillance is testing to identify people who are
infected. However, global testing rates are falling as we emerge from the acute health …

Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City region

MT Maurano, S Ramaswami, P Zappile… - Genome …, 2020 - genome.cshlp.org
Effective public response to a pandemic relies upon accurate measurement of the extent
and dynamics of an outbreak. Viral genome sequencing has emerged as a powerful …

[HTML][HTML] Genomic sequencing effort for SARS-CoV-2 by country during the pandemic

Y Furuse - International Journal of Infectious Diseases, 2021 - Elsevier
Since the emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2),
tremendous efforts have been made to sequence the viral genome from samples collected …

Assessment of SARS-CoV-2 genome sequencing: quality criteria and low-frequency variants

D Jacot, T Pillonel, G Greub… - Journal of Clinical …, 2021 - Am Soc Microbiol
Although many laboratories worldwide have developed their sequencing capacities in
response to the need for SARS-CoV-2 genome-based surveillance of variants, only a few …

[HTML][HTML] Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples

M Xiao, X Liu, J Ji, M Li, J Li, L Yang, W Sun, P Ren… - Genome medicine, 2020 - Springer
Abstract Background COVID-19 (coronavirus disease 2019) has caused a major epidemic
worldwide; however, much is yet to be known about the epidemiology and evolution of the …

[HTML][HTML] Challenges and opportunities for global genomic surveillance strategies in the COVID-19 era

T Ling-Hu, E Rios-Guzman, R Lorenzo-Redondo… - Viruses, 2022 - mdpi.com
Global SARS-CoV-2 genomic surveillance efforts have provided critical data on the ongoing
evolution of the virus to inform best practices in clinical care and public health throughout the …

[HTML][HTML] Global SARS-CoV-2 genomic surveillance: What we have learned (so far)

S Tosta, K Moreno, G Schuab, V Fonseca… - Infection, Genetics and …, 2023 - Elsevier
The COVID-19 pandemic has brought significant challenges for genomic surveillance
strategies in public health systems worldwide. During the past thirty-four months, many …

Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities

M Chiara, AM D'Erchia, C Gissi… - Briefings in …, 2021 - academic.oup.com
Various next generation sequencing (NGS) based strategies have been successfully used in
the recent past for tracing origins and understanding the evolution of infectious agents …