Abstract 3Drefine is an interactive web server for consistent and computationally efficient
protein structure refinement with the capability to perform web-based statistical and visual …

One of the major limitations of computational protein structure prediction is the deviation of
predicted models from their experimentally derived true, native structures. The limitations …

Protein structure refinement during CASP11 by the Feig group was described. Molecular
dynamics simulations were used in combination with an improved selection and averaging …

The quality of model structures generated by contemporary protein structure prediction
methods strongly depends on the degree of similarity between the target and available …

Protein structures are essential in modern biology yet experimental methods are far from
being able to catch up with the rapid increase in available genomic data. Computational …

Achieving atomic level accuracy in de novo structure prediction presents a formidable
challenge even in the context of protein models with correct topologies. High‐resolution …

Most protein structural prediction algorithms assemble structures as reduced models that
represent amino acids by a reduced number of atoms to speed up the conformational …

The KoBaMIN web server provides an online interface to a simple, consistent and
computationally efficient protein structure refinement protocol based on minimization of a …

We used molecular dynamics (MD) simulations for structure refinement of Critical
Assessment of Techniques for Protein Structure Prediction 10 (CASP10) targets. Refinement …

Knowledge of protein structures is essential to understand proteins' functions, evolution,
dynamics, stabilities, and interactions and for data-driven protein-or drug design. Yet …