The KoBaMIN web server provides an online interface to a simple, consistent and
computationally efficient protein structure refinement protocol based on minimization of a …

Fragment-based approaches are the current standard for de novo protein structure
prediction. These approaches rely on accurate and reliable fragment libraries to generate …

Abstract 3Drefine is an interactive web server for consistent and computationally efficient
protein structure refinement with the capability to perform web-based statistical and visual …

The quality of model structures generated by contemporary protein structure prediction
methods strongly depends on the degree of similarity between the target and available …

The 3D structure of a protein can be predicted from its amino acid sequence with high
accuracy for a large fraction of cases because of the availability of large quantities of …

One of the most challenging problems in protein structure prediction is improvement of
homology models (structures within 1–3 Å Cα rmsd of the native structure), also known as …

We here report on the assessment of the model refinement predictions submitted to the 12th
Experiment on the Critical Assessment of Protein Structure Prediction (CASP12). This is the …

The DeepRefiner webserver, freely available at http://watson. cse. eng. auburn.
edu/DeepRefiner/, is an interactive and fully configurable online system for high-accuracy …

Here we report on the assessment results of the third experiment to evaluate the state of the
art in protein model refinement, where participants were invited to improve the accuracy of …

Protein structure refinement is an important but unsolved problem; it must be solved if we are
to predict biological function that is very sensitive to structural details. Specifically, critical …