Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts

BK Cho, EM Knight, CL Barrett, BØ Palsson - Genome research, 2008 - genome.cshlp.org
We determined the genome-wide distribution of the nucleoid-associated protein Fis in
Escherichia coli using chromatin immunoprecipitation coupled with high-resolution whole …

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

C Kahramanoglou, ASN Seshasayee… - Nucleic acids …, 2011 - academic.oup.com
Nucleoid-associated proteins (NAPs) are global regulators of gene expression in
Escherichia coli, which affect DNA conformation by bending, wrapping and bridging the …

The shape of the DNA minor groove directs binding by the DNA-bending protein Fis

S Stella, D Cascio, RC Johnson - Genes & development, 2010 - genesdev.cshlp.org
The bacterial nucleoid-associated protein Fis regulates diverse reactions by bending DNA
and through DNA-dependent interactions with other control proteins and enzymes. In …

FIS modulates growth phase‐dependent topological transitions of DNA in Escherichia coli

R Schneider, A Travers… - Molecular …, 1997 - Wiley Online Library
The Escherichia coli DNA‐binding protein FIS serves as a DNA architectural factor in two
unrelated enzymatic reactions, the site‐specific inversion of DNA and transcriptional …

Functional characterization of the Escherichia coli Fis–DNA binding sequence

Y Shao, LS Feldman-Cohen, R Osuna - Journal of molecular biology, 2008 - Elsevier
The Escherichia coli protein Fis is remarkable for its ability to interact specifically with DNA
sites of highly variable sequences. The mechanism of this sequence-flexible DNA …

Effects of Fis on Escherichia coli gene expression during different growth stages

MD Bradley, MB Beach, APJ de Koning… - …, 2007 - microbiologyresearch.org
Fis is a nucleoid-associated protein in Escherichia coli that is abundant during early
exponential growth in rich medium but is in short supply during stationary phase. Its role as a …

Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription

C Cagliero, RS Grand, MB Jones, DJ Jin… - Nucleic acids …, 2013 - academic.oup.com
To fit within the confines of the cell, bacterial chromosomes are highly condensed into a
structure called the nucleoid. Despite the high degree of compaction in the nucleoid, the …

Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome

DC Grainger, D Hurd, MD Goldberg… - Nucleic acids …, 2006 - academic.oup.com
The Escherichia coli chromosome is condensed into an ill-defined structure known as the
nucleoid. Nucleoid-associated DNA-binding proteins are involved in maintaining this …

Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis

D Skoko, D Yoo, H Bai, B Schnurr, J Yan… - Journal of molecular …, 2006 - Elsevier
Fis, the most abundant DNA-binding protein in Escherichia coli during rapid growth, has
been suspected to play an important role in defining nucleoid structure. Using bulk-phase …

[HTML][HTML] Genome-scale Analysis of Escherichia coli FNR Reveals Complex Features of Transcription Factor Binding

KS Myers, H Yan, IM Ong, D Chung, K Liang… - PLoS …, 2013 - journals.plos.org
FNR is a well-studied global regulator of anaerobiosis, which is widely conserved across
bacteria. Despite the importance of FNR and anaerobiosis in microbial lifestyles, the factors …