SAG-RAD: a method for single-cell population genomics of unicellular eukaryotes

R Gollnisch, J Wallenius, KE Gribble… - Molecular biology …, 2023 - academic.oup.com
Sequencing of reduced representation libraries enables genotyping of many individuals for
population genomic studies. However, high amounts of DNA are required, and the method …

Next generation sequencing in nonmodel organisms: has the future arrived?

ML Johansson - 2009 - academic.oup.com
The conference Next Generation Genome Analysis in Non-Model Organisms was an
American Genetic Association special event hosted by the University of Connecticut at Storrs …

Genomicus: five genome browsers for comparative genomics in eukaryota

A Louis, M Muffato, H Roest Crollius - Nucleic acids research, 2012 - academic.oup.com
Abstract Genomicus (http://www. dyogen. ens. fr/genomicus/) is a database and an online
tool that allows easy comparative genomic visualization in> 150 eukaryote genomes. It …

Genomes in a bottle: creating standard reference materials for genomic variation-why, what and how?

JM Zook, M Salit - Genome biology, 2011 - Springer
Deep exome resequencing is a powerful approach for delineating patterns of protein-coding
variation among genes, pathways, individuals and populations. We analyzed exome data …

Ensembl Genomes 2016: more genomes, more complexity

PJ Kersey, JE Allen, I Armean, S Boddu… - Nucleic acids …, 2016 - academic.oup.com
Abstract Ensembl Genomes (http://www. ensemblgenomes. org) is an integrating resource
for genome-scale data from non-vertebrate species, complementing the resources for …

Direct determination of diploid genome sequences

NI Weisenfeld, V Kumar, P Shah, DM Church… - Genome …, 2017 - genome.cshlp.org
Determining the genome sequence of an organism is challenging, yet fundamental to
understanding its biology. Over the past decade, thousands of human genomes have been …

Sequencing, assembling, and correcting draft genomes using recombinant populations

MW Hahn, SV Zhang, LC Moyle - G3: Genes, Genomes …, 2014 - academic.oup.com
Current de novo whole-genome sequencing approaches often are inadequate for
organisms lacking substantial preexisting genetic data. Problems with these methods are …

[HTML][HTML] A universal DNA mini-barcode for biodiversity analysis

I Meusnier, GAC Singer, JF Landry, DA Hickey… - BMC genomics, 2008 - Springer
Background The goal of DNA barcoding is to develop a species-specific sequence library for
all eukaryotes. A 650 bp fragment of the cytochrome c oxidase 1 (CO1) gene has been used …

Ecological perspectives on the sequenced genome collection

JB Hughes Martiny, D Field - Ecology Letters, 2005 - Wiley Online Library
Our complete genome collection is one of our most valuable biological resources. A key
challenge for the future is the interpretation of these genomes from an ecological …

[HTML][HTML] Using comparative genomics to reorder the human genome sequence into a virtual sheep genome

BP Dalrymple, EF Kirkness, M Nefedov, S McWilliam… - Genome biology, 2007 - Springer
Background Is it possible to construct an accurate and detailed subgene-level map of a
genome using bacterial artificial chromosome (BAC) end sequences, a sparse marker map …