P-GRe: An efficient pipeline to maximised pseudogene prediction in plants/eucaryotes
S Cabanac, C Mathe, C Dunand - bioRxiv, 2023 - biorxiv.org
Formerly considered as part of" junk DNA", pseudogenes are nowadays known for their role
in the post-transcriptional regulation of functional genes. In addition, their identification …
in the post-transcriptional regulation of functional genes. In addition, their identification …
Pseudogenes and their genome-wide prediction in plants
J Xiao, MK Sekhwal, P Li, R Ragupathy… - International Journal of …, 2016 - mdpi.com
Pseudogenes are paralogs generated from ancestral functional genes (parents) during
genome evolution, which contain critical defects in their sequences, such as lacking a …
genome evolution, which contain critical defects in their sequences, such as lacking a …
Gauging the trends of pseudogenes in plants
N Garewal, N Goyal, S Pathania, J Kaur… - Critical Reviews in …, 2021 - Taylor & Francis
Pseudogenes, the debilitated parts of ancient genes, were previously scrapped off as junk or
discarded genes with no functional significance. Pseudogenes have come under scrutiny for …
discarded genes with no functional significance. Pseudogenes have come under scrutiny for …
GENCODE pseudogenes
C Sisu - Pseudogenes: Functions and Protocols, 2021 - Springer
Pseudogenes have long been considered nonfunctional elements. The influx of large-scale
sequencing projects over the last decade have provided rich sources of evidence that …
sequencing projects over the last decade have provided rich sources of evidence that …
Current trends in pseudogene detection and characterization
EC Rouchka, IE Cha - Current Bioinformatics, 2009 - ingentaconnect.com
Pseudogenes are homologous relatives of known genes that have lost their ability to
function as a transcriptional unit. Three classes of pseudogenes are known to exist …
function as a transcriptional unit. Three classes of pseudogenes are known to exist …
GENCODE pseudogenes
A Frankish, J Harrow - Pseudogenes: Functions and Protocols, 2014 - Springer
Historically pseudogenes were believed to represent nonfunctional genomic fossils;
however, there is emerging evidence that many of them could be biologically active. This …
however, there is emerging evidence that many of them could be biologically active. This …
Unravelling the due importance of pseudogenes and their resurrection in plants
The complexities of a genome are underpinned to the vast expanses of the intergenic
region, which constitutes∼ 97–98% of the genome. This region is essentially composed of …
region, which constitutes∼ 97–98% of the genome. This region is essentially composed of …
Pseudogene. org: a comprehensive database and comparison platform for pseudogene annotation
The Pseudogene. org knowledgebase serves as a comprehensive repository for
pseudogene annotation. The definition of a pseudogene varies within the literature, resulting …
pseudogene annotation. The definition of a pseudogene varies within the literature, resulting …
Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice
C Zou, MD Lehti-Shiu, F Thibaud-Nissen… - Plant …, 2009 - academic.oup.com
Pseudogenes (Ψ) are nonfunctional genomic sequences resembling functional genes.
Knowledge of Ψs can improve genome annotation and our understanding of genome …
Knowledge of Ψs can improve genome annotation and our understanding of genome …
Regulatory roles of novel small RNAs from pseudogenes
Arising from gene duplications or retrotranspositions, pseudogenes are genomic sequences
with high sequence similarity to functional genes but unable to encode the same type of …
with high sequence similarity to functional genes but unable to encode the same type of …