[HTML][HTML] Dynamics of the 4D genome during in vivo lineage specification and differentiation
AM Oudelaar, RA Beagrie, M Gosden… - Nature …, 2020 - nature.com
Mammalian gene expression patterns are controlled by regulatory elements, which interact
within topologically associating domains (TADs). The relationship between activation of …
within topologically associating domains (TADs). The relationship between activation of …
Long-range interactions between topologically associating domains shape the four-dimensional genome during differentiation
Genomic information is selectively used to direct spatial and temporal gene expression
during differentiation. Interactions between topologically associating domains (TADs) and …
during differentiation. Interactions between topologically associating domains (TADs) and …
[HTML][HTML] Three-dimensional folding dynamics of the Xenopus tropicalis genome
L Niu, W Shen, Z Shi, Y Tan, N He, J Wan, J Sun… - Nature Genetics, 2021 - nature.com
Animal interphase chromosomes are organized into topologically associating domains
(TADs). How TADs are formed is not fully understood. Here, we combined high-throughput …
(TADs). How TADs are formed is not fully understood. Here, we combined high-throughput …
[HTML][HTML] Resolving the 3D landscape of transcription-linked mammalian chromatin folding
Whereas folding of genomes at the large scale of epigenomic compartments and
topologically associating domains (TADs) is now relatively well understood, how chromatin …
topologically associating domains (TADs) is now relatively well understood, how chromatin …
Evolution of 3D chromatin organization at different scales
RD Acemel, DG Lupiáñez - Current opinion in genetics & development, 2023 - Elsevier
Highlights•Chromatin folding into topologically associated domains (TADs) is pervasive
across animal groups.•TADs are plastic entities composed of genomic strata from different …
across animal groups.•TADs are plastic entities composed of genomic strata from different …
[HTML][HTML] Multiscale 3D genome rewiring during mouse neural development
Chromosome conformation capture technologies have revealed important insights into
genome folding. Yet, how spatial genome architecture is related to gene expression and cell …
genome folding. Yet, how spatial genome architecture is related to gene expression and cell …
[HTML][HTML] Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription
A new level of chromosome organization, topologically associating domains (TADs), was
recently uncovered by chromosome conformation capture (3C) techniques. To explore TAD …
recently uncovered by chromosome conformation capture (3C) techniques. To explore TAD …
[HTML][HTML] Structural fluctuations of the chromatin fiber within topologically associating domains
Experiments based on chromosome conformation capture have shown that mammalian
genomes are partitioned into topologically associating domains (TADs), within which the …
genomes are partitioned into topologically associating domains (TADs), within which the …
[HTML][HTML] Chromatin architecture emerges during zygotic genome activation independent of transcription
Chromatin architecture is fundamental in regulating gene expression. To investigate when
spatial genome organization is first established during development, we examined …
spatial genome organization is first established during development, we examined …
[HTML][HTML] Defining functionally relevant spatial chromatin domains: it is a TAD complicated
N Sikorska, T Sexton - Journal of molecular biology, 2020 - Elsevier
Chromosome conformation capture and orthologous methods uncovered the spatial
organization of metazoan chromosomes into autonomously folded substructures, often …
organization of metazoan chromosomes into autonomously folded substructures, often …