A comparative assessment of ranking accuracies of conventional and machine-learning-based scoring functions for protein-ligand binding affinity prediction
HM Ashtawy, NR Mahapatra - IEEE/ACM Transactions on …, 2012 - ieeexplore.ieee.org
Accurately predicting the binding affinities of large sets of protein-ligand complexes
efficiently is a key challenge in computational biomolecular science, with applications in …
efficiently is a key challenge in computational biomolecular science, with applications in …
A comparative assessment of predictive accuracies of conventional and machine learning scoring functions for protein-ligand binding affinity prediction
HM Ashtawy, NR Mahapatra - IEEE/ACM transactions on …, 2014 - ieeexplore.ieee.org
Accurately predicting the binding affinities of large diverse sets of protein-ligand complexes
efficiently is a key challenge in computational biomolecular science, with applications in …
efficiently is a key challenge in computational biomolecular science, with applications in …
[HTML][HTML] BgN-Score and BsN-Score: Bagging and boosting based ensemble neural networks scoring functions for accurate binding affinity prediction of protein-ligand …
HM Ashtawy, NR Mahapatra - BMC bioinformatics, 2015 - Springer
Background Accurately predicting the binding affinities of large sets of protein-ligand
complexes is a key challenge in computational biomolecular science, with applications in …
complexes is a key challenge in computational biomolecular science, with applications in …
XLPFE: A simple and effective machine learning scoring function for protein–ligand scoring and ranking
L Dong, X Qu, B Wang - ACS omega, 2022 - ACS Publications
Prediction of protein–ligand binding affinities is a central issue in structure-based computer-
aided drug design. In recent years, much effort has been devoted to the prediction of the …
aided drug design. In recent years, much effort has been devoted to the prediction of the …
Empirical Scoring Functions for Affinity Prediction of Protein‐ligand Complexes
LP Pason, CA Sotriffer - Molecular Informatics, 2016 - Wiley Online Library
The ability to rapidly assess the quality of a protein‐ligand complex in terms of its affinity is of
fundamental importance for various methods of computer‐aided drug design. While simple …
fundamental importance for various methods of computer‐aided drug design. While simple …
[HTML][HTML] A knowledge-guided strategy for improving the accuracy of scoring functions in binding affinity prediction
Background Current scoring functions are not very successful in protein-ligand binding
affinity prediction albeit their popularity in structure-based drug designs. Here, we propose a …
affinity prediction albeit their popularity in structure-based drug designs. Here, we propose a …
[HTML][HTML] Scoring functions for protein-ligand binding affinity prediction using structure-based deep learning: a review
The rapid and accurate in silico prediction of protein-ligand binding free energies or binding
affinities has the potential to transform drug discovery. In recent years, there has been a …
affinities has the potential to transform drug discovery. In recent years, there has been a …
Task-specific scoring functions for predicting ligand binding poses and affinity and for screening enrichment
HM Ashtawy, NR Mahapatra - Journal of chemical information and …, 2018 - ACS Publications
Molecular docking, scoring, and virtual screening play an increasingly important role in
computer-aided drug discovery. Scoring functions (SFs) are typically employed to predict the …
computer-aided drug discovery. Scoring functions (SFs) are typically employed to predict the …
Iterative Knowledge-Based Scoring Function for Protein–Ligand Interactions by Considering Binding Affinity Information
Scoring functions for protein–ligand interactions play a critical role in structure-based drug
design. Owing to the good balance between general applicability and computational …
design. Owing to the good balance between general applicability and computational …
Improving the binding affinity estimations of protein–ligand complexes using machine-learning facilitated force field method
Scoring functions are routinely deployed in structure-based drug design to quantify the
potential for protein–ligand (PL) complex formation. Here, we present a new scoring function …
potential for protein–ligand (PL) complex formation. Here, we present a new scoring function …
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