Studies on the origin and evolution of codon bias
JC Biro - arXiv preprint arXiv:0807.3901, 2008 - arxiv.org
Background: There is a 3-fold redundancy in the Genetic Code; most amino acids are
encoded by more than one codon. These synonymous codons are not used equally; there is …
encoded by more than one codon. These synonymous codons are not used equally; there is …
[HTML][HTML] Does codon bias have an evolutionary origin?
JC Biro - Theoretical Biology and Medical Modelling, 2008 - Springer
Background There is a 3-fold redundancy in the Genetic Code; most amino acids are
encoded by more than one codon. These synonymous codons are not used equally; there is …
encoded by more than one codon. These synonymous codons are not used equally; there is …
Measuring codon usage bias
A Roth, M Anisimova… - … : mechanisms and models, 2012 - books.google.com
In protein-coding genes, the genetic code defines the translational mapping from nucleotide
triplets (or codons) to amino acids. Synonymous codons translate to the same amino acid …
triplets (or codons) to amino acids. Synonymous codons translate to the same amino acid …
Codon usage bias: an endless tale
Since the genetic code is degenerate, several codons are translated to the same amino
acid. Although these triplets were historically considered to be “synonymous” and therefore …
acid. Although these triplets were historically considered to be “synonymous” and therefore …
[PDF][PDF] Codon usage bias is evolutionarily conserved
BMH Keng, OYW Chan, MHT Ling - Asia Pacific Journal of Life Sciences, 2014 - Citeseer
Codon usage bias (CUB) reflects the frequency distribution of codons usage in the genome.
Several studies suggest that CUB is based on the combinations, which are most chemically …
Several studies suggest that CUB is based on the combinations, which are most chemically …
CodonO: codon usage bias analysis within and across genomes
MC Angellotti, SB Bhuiyan, G Chen… - Nucleic acids …, 2007 - academic.oup.com
Synonymous codon usage biases are associated with various biological factors, such as
gene expression level, gene length, gene translation initiation signal, protein amino acid …
gene expression level, gene length, gene translation initiation signal, protein amino acid …
Selection on codon bias
R Hershberg, DA Petrov - Annual review of genetics, 2008 - annualreviews.org
In a wide variety of organisms, synonymous codons are used with different frequencies, a
phenomenon known as codon bias. Population genetic studies have shown that …
phenomenon known as codon bias. Population genetic studies have shown that …
The analysis method and progress in the study of codon bias
XM Wu, SF Wu, DM Ren, YP Zhu, FC He - Yi Chuan= Hereditas, 2007 - europepmc.org
Codon bias refers to the nonrandom usage of synonymous codons for encoding amino
acids in organisms. As it is related to the carrier molecular of genetic information (DNA) and …
acids in organisms. As it is related to the carrier molecular of genetic information (DNA) and …
Codon usage bias: causative factors, quantification methods and genome‐wide patterns: with emphasis on insect genomes
SK Behura, DW Severson - Biological Reviews, 2013 - Wiley Online Library
Codon usage bias refers to the phenomenon where specific codons are used more often
than other synonymous codons during translation of genes, the extent of which varies within …
than other synonymous codons during translation of genes, the extent of which varies within …
Enhanced effective codon numbers to understand codon usage bias
RD Smith - Biosystems, 2022 - Elsevier
Codon usage bias is a well recognized phenomenon but the relative influence of its major
causes: G+ C content, mutational biases, and selection, are often difficult to disentangle …
causes: G+ C content, mutational biases, and selection, are often difficult to disentangle …