Oncogenes and tumor suppressor genes: comparative genomics and network perspectives

K Zhu, Q Liu, Y Zhou, C Tao, Z Zhao, J Sun, H Xu - BMC genomics, 2015 - Springer
Background Defective tumor suppressor genes (TSGs) and hyperactive oncogenes (OCGs)
heavily contribute to cell proliferation and apoptosis during cancer development through …

A comparative study of cancer proteins in the human protein-protein interaction network

J Sun, Z Zhao - BMC genomics, 2010 - Springer
Background Cancer is a complex disease. So far, many genes have been reported to
involve in the development of cancer. Rather than the traditional approach to studying …

Double agents: genes with both oncogenic and tumor-suppressor functions

L Shen, Q Shi, W Wang - Oncogenesis, 2018 - nature.com
The role of genetic components in cancer development is an area of interest for cancer
biologists in general. Intriguingly, some genes have both oncogenic and tumor-suppressor …

Do cancer proteins really interact strongly in the human protein–protein interaction network?

J Xia, J Sun, P Jia, Z Zhao - Computational biology and chemistry, 2011 - Elsevier
Protein–protein interaction (PPI) network analysis has been widely applied in the
investigation of the mechanisms of diseases, especially cancer. Recent studies revealed …

Core and specific network markers of carcinogenesis from multiple cancer samples

YH Wong, RH Chen, BS Chen - Journal of theoretical biology, 2014 - Elsevier
Cancer is the leading cause of death worldwide and is generally caused by mutations in
multiple proteins or the dysregulation of pathways. Understanding the causes and the …

DORGE: Discovery of Oncogenes and tumoR suppressor genes using Genetic and Epigenetic features

J Lyu, JJ Li, J Su, F Peng, YE Chen, X Ge, W Li - Science advances, 2020 - science.org
Data-driven discovery of cancer driver genes, including tumor suppressor genes (TSGs) and
oncogenes (OGs), is imperative for cancer prevention, diagnosis, and treatment. Although …

A comparative study of disease genes and drug targets in the human protein interactome

J Sun, K Zhu, WJ Zheng, H Xu - BMC bioinformatics, 2015 - Springer
Background Disease genes cause or contribute genetically to the development of the most
complex diseases. Drugs are the major approaches to treat the complex disease through …

[PDF][PDF] The role of protein interaction domains in the human cancer network

SS Ibrahim, MAR Eldeeb, MAH Rady, KMA Hady… - Network Biology, 2011 - iaees.org
Protein-protein interaction networks provide a global picture of cellular function and
biological processes. Proteins interact largely through specific domains which constitute the …

Regulatory network motifs and hotspots of cancer genes in a mammalian cellular signalling network

A Awan, H Bari, F Yan, S Moksong, S Yang… - IET systems biology, 2007 - IET
Mutations or overexpression of signalling genes can result in cancer development and
metastasis. In this study, we manually assembled a human cellular signalling network and …

[HTML][HTML] Design protein-protein interaction network and protein-drug interaction network for common cancer diseases: A bioinformatics approach

MR Hasan, BK Paul, K Ahmed, T Bhuyian - Informatics in Medicine …, 2020 - Elsevier
Background In terms of genomics, bioinformatics conceptualizes biological processes and
utilizes computer science to generate knowledge from biological data. Bioinformatics is …