Neighborhood regularized logistic matrix factorization for drug-target interaction prediction

Y Liu, M Wu, C Miao, P Zhao, XL Li - PLoS computational biology, 2016 - journals.plos.org
In pharmaceutical sciences, a crucial step of the drug discovery process is the identification
of drug-target interactions. However, only a small portion of the drug-target interactions have …

Drug-target interaction prediction with graph regularized matrix factorization

A Ezzat, P Zhao, M Wu, XL Li… - IEEE/ACM transactions …, 2016 - ieeexplore.ieee.org
Experimental determination of drug-target interactions is expensive and time-consuming.
Therefore, there is a continuous demand for more accurate predictions of interactions using …

Predicting drug-target interactions by dual-network integrated logistic matrix factorization

M Hao, SH Bryant, Y Wang - Scientific reports, 2017 - nature.com
In this work, we propose a dual-network integrated logistic matrix factorization (DNILMF)
algorithm to predict potential drug-target interactions (DTI). The prediction procedure …

[HTML][HTML] Manifold regularized matrix factorization for drug-drug interaction prediction

W Zhang, Y Chen, D Li, X Yue - Journal of biomedical informatics, 2018 - Elsevier
Drug-drug interaction (DDI) prediction is one of the most important tasks in drug discovery.
Prediction of potential DDIs helps to reduce unexpected side effects in the lifecycle of drugs …

ISCMF: Integrated similarity-constrained matrix factorization for drug–drug interaction prediction

N Rohani, C Eslahchi, A Katanforoush - Network Modeling Analysis in …, 2020 - Springer
Drug–drug interaction (DDI) prediction prepares substantial information for drug discovery.
As the exact prediction of DDIs can reduce human health risk, the development of an …

Identification of drug–target interactions via multiple kernel-based triple collaborative matrix factorization

Y Ding, J Tang, F Guo, Q Zou - Briefings in Bioinformatics, 2022 - academic.oup.com
Targeted drugs have been applied to the treatment of cancer on a large scale, and some
patients have certain therapeutic effects. It is a time-consuming task to detect drug–target …

A multiple kernel learning algorithm for drug-target interaction prediction

ACA Nascimento, RBC Prudêncio, IG Costa - BMC bioinformatics, 2016 - Springer
Background Drug-target networks are receiving a lot of attention in late years, given its
relevance for pharmaceutical innovation and drug lead discovery. Different in silico …

Drug–target interaction prediction by learning from local information and neighbors

JP Mei, CK Kwoh, P Yang, XL Li, J Zheng - Bioinformatics, 2013 - academic.oup.com
Motivation: In silico methods provide efficient ways to predict possible interactions between
drugs and targets. Supervised learning approach, bipartite local model (BLM), has recently …

Drug-target interaction prediction through label propagation with linear neighborhood information

W Zhang, Y Chen, D Li - Molecules, 2017 - mdpi.com
Interactions between drugs and target proteins provide important information for the drug
discovery. Currently, experiments identified only a small number of drug-target interactions …

Gaussian interaction profile kernels for predicting drug–target interaction

T Van Laarhoven, SB Nabuurs, E Marchiori - Bioinformatics, 2011 - academic.oup.com
Motivation: The in silico prediction of potential interactions between drugs and target
proteins is of core importance for the identification of new drugs or novel targets for existing …