TG468: a text graph convolutional network for predicting clinical response to immune checkpoint inhibitor therapy

K Wang, J Shi, X Tong, N Qu, X Kong… - Briefings in …, 2024 - academic.oup.com
Enhancing cancer treatment efficacy remains a significant challenge in human health.
Immunotherapy has witnessed considerable success in recent years as a treatment for …

[HTML][HTML] IRnet: Immunotherapy response prediction using pathway knowledge-informed graph neural network

Y Jiang, MS Immadi, D Wang, S Zeng, YO Chan… - Journal of Advanced …, 2024 - Elsevier
Abstract Introduction Immune checkpoint inhibitors (ICIs) are potent and precise therapies
for various cancer types, significantly improving survival rates in patients who respond …

Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network

L Zhao, X Qi, Y Chen, Y Qiao, D Bu, Y Wu… - Briefings in …, 2023 - academic.oup.com
The determination of transcriptome profiles that mediate immune therapy in cancer remains
a major clinical and biological challenge. Despite responses induced by immune-check …

Unlocking the Potentials of Transcriptomics in Predicting Pan Cancer Immune Therapy Response: A Deep Learning Approach Using PHZNet

H Pan, K Yu, J Le, W Hu, T Jin - 2023 IEEE 22nd International …, 2023 - ieeexplore.ieee.org
The effectiveness of immune checkpoint blockade (ICB) therapy, a critical strategy in cancer
immunotherapy, is often limited by a high rate of primary resistance. Identifying patients …

1295 Integrating drug structure and target binding affinity for improved prediction of survival in cancer patients treated with immune checkpoint inhibitors

S Kumar, F Kuperwaser, D Tracy, J Sherman… - 2023 - jitc.bmj.com
Background Immune checkpoint inhibitors (ICIs) have transformed cancer therapy, yet their
response rates remain modest, ranging from 20–40% across different cancer types. 1 There …

1296 Reconstructing gene expression from clinical and genetic panel data for predictions of tumor microenvironment features and response to immune checkpoint …

F Kuperwaser, S Kumar, D Tracy, J Sherman… - 2023 - jitc.bmj.com
Background The development of immune checkpoint inhibitor (ICI) therapy has
fundamentally changed the landscape of cancer treatment. While ICIs have exhibited …

DeepCDR: a hybrid graph convolutional network for predicting cancer drug response

Q Liu, Z Hu, R Jiang, M Zhou - Bioinformatics, 2020 - academic.oup.com
Motivation Accurate prediction of cancer drug response (CDR) is challenging due to the
uncertainty of drug efficacy and heterogeneity of cancer patients. Strong evidences have …

AMU: Using mRNA Embedding in Self-Attention Network to Predict Melanoma Immune Checkpoint Inhibitor Response

Y Yin, Q Wu, Z Wang, Y Kang, X Xie - medRxiv, 2022 - medrxiv.org
Background To precisely predict drug response and avoid unnecessary treatment have
been urgent needs to be resolved in the age of melanoma immunotherapy. Deep learning …

DrugFormer: Graph‐Enhanced Language Model to Predict Drug Sensitivity

X Liu, Q Wang, M Zhou, Y Wang, X Wang… - Advanced …, 2024 - Wiley Online Library
Drug resistance poses a crucial challenge in healthcare, with response rates to
chemotherapy and targeted therapy remaining low. Individual patient's resistance is …

Improving anti-cancer drug response prediction using multi-task learning on graph convolutional networks

H Liu, W Peng, W Dai, J Lin, X Fu, L Liu, L Liu, N Yu - Methods, 2024 - Elsevier
Predicting the therapeutic effect of anti-cancer drugs on tumors based on the characteristics
of tumors and patients is one of the important contents of precision oncology. Existing …