Spatial normalization of brain images and beyond

JF Mangin, J Lebenberg, S Lefranc, N Labra… - Medical image …, 2016 - Elsevier
The deformable atlas paradigm has been at the core of computational anatomy during the
last two decades. Spatial normalization is the variant endowing the atlas with a coordinate …

Effects of registration regularization and atlas sharpness on segmentation accuracy

BTT Yeo, MR Sabuncu, R Desikan, B Fischl… - Medical image …, 2008 - Elsevier
In non-rigid registration, the tradeoff between warp regularization and image fidelity is
typically determined empirically. In atlas-based segmentation, this leads to a probabilistic …

Dense deformation field estimation for atlas-based segmentation of pathological MR brain images

MB Cuadra, M De Craene, V Duay, B Macq… - Computer methods and …, 2006 - Elsevier
Atlas registration is a recognized paradigm for the automatic segmentation of normal MR
brain images. Unfortunately, atlas-based segmentation has been of limited use in presence …

[PDF][PDF] Segmentation propagation from deformable atlases for brain mapping and analysis

MG Linguraru, T Vercauteren… - Brain Research …, 2007 - researchgate.net
Magnetic resonance imaging (MRI) is commonly employed for the depiction of soft tissues,
most notably the human brain. Computer-aided image analysis techniques lead to image …

Effects of registration regularization and atlas sharpness on segmentation accuracy

BTT Yeo, MR Sabuncu, R Desikan, B Fischl… - … Image Computing and …, 2007 - Springer
In this paper, we propose a unified framework for computing atlases from manually labeled
data at various degrees of “sharpness” and the joint registration-segmentation of a new …

Brain atlases and neuroanatomic imaging

CJ Crasto, SH Koslow, A MacKenzie-Graham, J Boline… - Neuroinformatics, 2007 - Springer
Quantifying the effect of a genetic manipulation or disease is a complicated process in a
population of animals. Probabilistic brain atlases can capture population variability and be …

Computational and mathematical methods in brain atlasing

WL Nowinski - The Neuroradiology Journal, 2017 - journals.sagepub.com
Brain atlases have a wide range of use from education to research to clinical applications.
Mathematical methods as well as computational methods and tools play a major role in the …

Simulating deformations of MR brain images for validation of atlas-based segmentation and registration algorithms

Z Xue, D Shen, B Karacali, J Stern, D Rottenberg… - NeuroImage, 2006 - Elsevier
Simulated deformations and images can act as the gold standard for evaluating various
template-based image segmentation and registration algorithms. Traditional deformable …

Effect of inter-subject variation on the accuracy of atlas-based segmentation applied to human brain structures

NT Doan, JO de Xivry, B Macq - Medical Imaging 2010: Image …, 2010 - spiedigitallibrary.org
Large variations occur in brain anatomical structures in human populations, presenting a
critical challenge to the brain mapping process. This study investigates the major impact of …

A template free approach to volumetric spatial normalization of brain anatomy

C Studholme, V Cardenas - Pattern Recognition Letters, 2004 - Elsevier
Approaches to brain image spatial normalization conventionally make use of a target image
to which each subject image is separately matched. In many cases the use of a single brain …