Genome-wide association study reveals the genetic architecture of flowering time in rapeseed (Brassica napus L.)

L Xu, K Hu, Z Zhang, C Guan, S Chen, W Hua… - DNA …, 2016 - academic.oup.com
Flowering time adaptation is a major breeding goal in the allopolyploid species Brassica
napus. To investigate the genetic architecture of flowering time, a genome-wide association …

An R package for Bayesian analysis of multi-environment and multi-trait multi-environment data for genome-based prediction

OA Montesinos-López… - G3: Genes …, 2019 - academic.oup.com
Evidence that genomic selection (GS) is a technology that is revolutionizing plant breeding
continues to grow. However, it is very well documented that its success strongly depends on …

[HTML][HTML] Application of genomic selection at the early stage of breeding pipeline in tropical maize

Y Beyene, M Gowda, P Pérez-Rodríguez… - Frontiers in Plant …, 2021 - frontiersin.org
In maize, doubled haploid (DH) line production capacity of large-sized maize breeding
programs often exceeds the capacity to phenotypically evaluate the complete set of testcross …

[HTML][HTML] Deep learning for predicting complex traits in spring wheat breeding program

KS Sandhu, DN Lozada, Z Zhang… - Frontiers in Plant …, 2021 - frontiersin.org
Genomic selection (GS) is transforming the field of plant breeding and implementing models
that improve prediction accuracy for complex traits is needed. Analytical methods for …

Genomic prediction applied to multiple traits and environments in second season maize hybrids

AA de Oliveira, MFR Resende Jr, LFV Ferrão… - Heredity, 2020 - nature.com
Genomic selection has become a reality in plant breeding programs with the reduction in
genotyping costs. Especially in maize breeding programs, it emerges as a promising tool for …

Genomic-enabled prediction in maize using kernel models with genotype× environment interaction

M Bandeira e Sousa, J Cuevas… - G3: Genes …, 2017 - academic.oup.com
Multi-environment trials are routinely conducted in plant breeding to select candidates for
the next selection cycle. In this study, we compare the prediction accuracy of four developed …

Genome-wide prediction for maize single-cross hybrids using the GBLUP model and validation in different crop seasons

NF Cantelmo, RG Von Pinho, M Balestre - Molecular breeding, 2017 - Springer
The aim of this study was to perform genome-wide selection using a set of Dart-seq markers
associated to the additive-dominant genomic best linear unbiased prediction (GBLUP) …

Genetic dissection of flowering time in flax (Linum usitatissimum L.) through single- and multi-locus genome-wide association studies

BJ Soto-Cerda, G Aravena, S Cloutier - Molecular Genetics and Genomics, 2021 - Springer
In a rapidly changing climate, flowering time (FL) adaptation is important to maximize seed
yield in flax (Linum usitatissimum L.). However, our understanding of the genetic mechanism …

Impact of the complexity of genotype by environment and dominance modeling on the predictive accuracy of maize hybrids in multi-environment prediction models

FC Alves, G Galli, FI Matias, MS Vidotti, JS Morosini… - Euphytica, 2021 - Springer
The prediction accuracy of multi-environment prediction models can be affected by the
complexity of the genotype by environment interaction (G× E). Moreover, depending on the …

[PDF][PDF] Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction

Y Xu, X Zhang, H Li, H Zheng, J Zhang, MS Olsen… - Molecular Plant, 2022 - cell.com
The first paradigm of plant breeding involves direct selection-based phenotypic observation,
followed by predictive breeding using statistical models for quantitative traits constructed …