Blastocyst-like structures generated solely from stem cells

NC Rivron, J Frias-Aldeguer, EJ Vrij, JC Boisset… - Nature, 2018 - nature.com
The blastocyst (the early mammalian embryo) forms all embryonic and extra-embryonic
tissues, including the placenta. It consists of a spherical thin-walled layer, known as the …

Single-cell analysis of cardiogenesis reveals basis for organ-level developmental defects

TY de Soysa, SS Ranade, S Okawa, S Ravichandran… - Nature, 2019 - nature.com
Organogenesis involves integration of diverse cell types; dysregulation of cell-type-specific
gene networks results in birth defects, which affect 5% of live births. Congenital heart defects …

Distinct modes of cell competition shape mammalian tissue morphogenesis

SJ Ellis, NC Gomez, J Levorse, AF Mertz, Y Ge… - Nature, 2019 - nature.com
Cell competition—the sensing and elimination of less fit 'loser'cells by neighbouring
'winner'cells—was first described in Drosophila. Although cell competition has been …

Primate cell fusion disentangles gene regulatory divergence in neurodevelopment

RM Agoglia, D Sun, F Birey, SJ Yoon, Y Miura… - Nature, 2021 - nature.com
Among primates, humans display a unique trajectory of development that is responsible for
the many traits specific to our species. However, the inaccessibility of primary human and …

A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates

P He, K Lim, D Sun, JP Pett, Q Jeng, K Polanski… - Cell, 2022 - cell.com
We present a multiomic cell atlas of human lung development that combines single-cell RNA
and ATAC sequencing, high-throughput spatial transcriptomics, and single-cell imaging …

[HTML][HTML] Embryo-scale reverse genetics at single-cell resolution

LM Saunders, SR Srivatsan, M Duran, MW Dorrity… - Nature, 2023 - nature.com
The maturation of single-cell transcriptomic technologies has facilitated the generation of
comprehensive cellular atlases from whole embryos,,–. A majority of these data, however …

Genome-wide atlas of gene expression in the adult mouse brain

ES Lein, MJ Hawrylycz, N Ao, M Ayres, A Bensinger… - Nature, 2007 - nature.com
Molecular approaches to understanding the functional circuitry of the nervous system
promise new insights into the relationship between genes, brain and behaviour. The cellular …

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

L Liu, C Liu, A Quintero, L Wu, Y Yuan, M Wang… - Nature …, 2019 - nature.com
Integrative analysis of multi-omics layers at single cell level is critical for accurate dissection
of cell-to-cell variation within certain cell populations. Here we report scCAT-seq, a …

The pluripotent genome in three dimensions is shaped around pluripotency factors

E De Wit, BAM Bouwman, Y Zhu, P Klous, E Splinter… - Nature, 2013 - nature.com
It is becoming increasingly clear that the shape of the genome importantly influences
transcription regulation. Pluripotent stem cells such as embryonic stem cells were recently …

Decoding the regulatory network of early blood development from single-cell gene expression measurements

V Moignard, S Woodhouse, L Haghverdi, AJ Lilly… - Nature …, 2015 - nature.com
Reconstruction of the molecular pathways controlling organ development has been
hampered by a lack of methods to resolve embryonic progenitor cells. Here we describe a …