Overview of guide RNA design tools for CRISPR-Cas9 genome editing technology

LJ Zhu - Frontiers in Biology, 2015 - Springer
Abstract CRISPR-Cas (Clustered, Regularly Interspaced, Short Palindromic Repeats–
CRISPR-associated (Cas)) RNA guided endonuclease has emerged as the most effective …

CRISPR guide RNA design guidelines for efficient genome editing

P Schindele, F Wolter, H Puchta - RNA Tagging: methods and protocols, 2020 - Springer
The simple applicability and facile target programming of the CRISPR/Cas9-system abolish
the major boundaries of previous genome editing tools, making it the tool of choice for …

dbGuide: a database of functionally validated guide RNAs for genome editing in human and mouse cells

AA Gooden, CN Evans, TP Sheets… - Nucleic Acids …, 2021 - academic.oup.com
With the technology's accessibility and ease of use, CRISPR has been employed widely in
many different organisms and experimental settings. As a result, thousands of publications …

Web-based CRISPR toolkits: Cas-OFFinder, cas-designer, and cas-analyzer

GH Hwang, JS Kim, S Bae - CRISPR Guide RNA Design: Methods and …, 2021 - Springer
The CRISPR-Cas system facilitates highly efficient genome editing; thus, it has been applied
in many research fields such as biological science, medicine, and gene therapy. However …

Cpf1-Database: web-based genome-wide guide RNA library design for gene knockout screens using CRISPR-Cpf1

J Park, S Bae - Bioinformatics, 2018 - academic.oup.com
Following the type II CRISPR-Cas9 system, type V CRISPR-Cpf1 endonucleases have been
found to be applicable for genome editing in various organisms in vivo. However, there are …

MultiGuideScan: a multi-processing tool for designing CRISPR guide RNA libraries

T Li, S Wang, F Luo, FX Wu, J Wang - Bioinformatics, 2020 - academic.oup.com
The recent advance in genome engineering technologies based on CRISPR/Cas9 system is
enabling people to systematically understand genomic functions. A short RNA string (the …

A review of CRISPR-based genome editing: survival, evolution and challenges

HI Ahmad, MJ Ahmad, AR Asif, M Adnan… - Current issues in …, 2018 - mdpi.com
Precise nucleic acid editing technologies have facilitated the research of cellular function
and the development of novel therapeutics, especially the current programmable nucleases …

CRISPR–Cas9-mediated genome editing and guide RNA design

MV Wiles, W Qin, AW Cheng, H Wang - Mammalian Genome, 2015 - Springer
CRISPR and CRISPR-associated (Cas) proteins, which in nature comprise the RNA-based
adaptive immune system in bacteria and archaea, have emerged as particularly powerful …

Using synthetically engineered guide RNAs to enhance CRISPR genome editing systems in mammalian cells

D Allen, M Rosenberg, A Hendel - Frontiers in Genome Editing, 2021 - frontiersin.org
CRISPR-Cas9 is quickly revolutionizing the way we approach gene therapy. CRISPR-Cas9
is a complexed, two-component system using a short guide RNA (gRNA) sequence to direct …

CRISPR-based technologies for the manipulation of eukaryotic genomes

AC Komor, AH Badran, DR Liu - Cell, 2017 - cell.com
The CRISPR-Cas9 RNA-guided DNA endonuclease has contributed to an explosion of
advances in the life sciences that have grown from the ability to edit genomes within living …