Detecting differential DNA methylation from sequencing of bisulfite converted DNA of diverse species
DNA methylation is one of the most extensively studied epigenetic modifications of genomic
DNA. In recent years, sequencing of bisulfite-converted DNA, particularly via next …
DNA. In recent years, sequencing of bisulfite-converted DNA, particularly via next …
Characterization of epigenetic biomarkers using new molecular approaches
MV Gentil, S Maury - Genomics-Assisted Crop Improvement: Vol. 1 …, 2007 - Springer
Plants exhibit a polymorphism of DNA methylation status in their genomes in relation to
various breeding traits and phenotypes. Evidence for relationships between DNA …
various breeding traits and phenotypes. Evidence for relationships between DNA …
DNA Methylation analysis in barley and other species with large genomes
Detailed DNA methylation analyses in plant species with large and highly repetitive
genomes can be challenging as well as costly. Here, we describe a complete protocol for a …
genomes can be challenging as well as costly. Here, we describe a complete protocol for a …
Bisulfite sequencing using small DNA amounts
S Edelmann, S Scholten - Plant chromatin dynamics: methods and …, 2018 - Springer
Bisulfite sequencing (BS-seq) enables the detection of DNA methylation at cytosine residues
(5mC) at single-nucleotide resolution. For many applications, a limiting factor of …
(5mC) at single-nucleotide resolution. For many applications, a limiting factor of …
Genet-specific DNA methylation probabilities detected in a spatial epigenetic analysis of a clonal plant population
In sessile organisms such as plants, spatial genetic structures of populations show long-
lasting patterns. These structures have been analyzed across diverse taxa to understand the …
lasting patterns. These structures have been analyzed across diverse taxa to understand the …
Plant epigenomics—deciphering the mechanisms of epigenetic inheritance and plasticity in plants
C Köhler, N Springer - Genome Biology, 2017 - Springer
It is an exciting time to study plant epigenetics. Technological advances are providing
unprecedented opportunities to monitor chromatin modifications, gene expression, and …
unprecedented opportunities to monitor chromatin modifications, gene expression, and …
Environmental and genealogical effects on DNA methylation in a widespread apomictic dandelion lineage
VN Ibañez, M van Antro, C Peña-Ponton… - Journal of …, 2023 - academic.oup.com
DNA methylation in plant genomes occurs in different sequences and genomic contexts that
have very different properties. DNA methylation that occurs in CG (mCG) sequence context …
have very different properties. DNA methylation that occurs in CG (mCG) sequence context …
Genome-Wide Analysis of DNA Methylation in Arabidopsis Using MeDIP-Chip
S Cortijo, R Wardenaar, M Colomé-Tatché… - Plant Epigenetics and …, 2014 - Springer
DNA methylation is an epigenetic mark that is essential for preserving genome integrity and
normal development in plants and mammals. Although this modification may serve a variety …
normal development in plants and mammals. Although this modification may serve a variety …
Ecological epigenetics: beyond MS-AFLP
Ecological Epigenetics studies the relationship between epigenetic variation and
ecologically relevant phenotypic variation. As molecular epigenetic mechanisms often …
ecologically relevant phenotypic variation. As molecular epigenetic mechanisms often …
Analysis of Bisulfite Sequencing Data Using Bismark and DMRcaller to Identify Differentially Methylated Regions
HT Lee - Plant Bioinformatics: Methods and Protocols, 2022 - Springer
The mechanism of the addition of a methyl group to cytosine has been identified as one of
several heritable epigenetic mechanisms. In plants, DNA methylation is involved in …
several heritable epigenetic mechanisms. In plants, DNA methylation is involved in …