Metabolic footprinting: Extracellular metabolomic analysis

V Behrends, HD Williams, JG Bundy - Pseudomonas Methods and …, 2014 - Springer
Uptake and excretion of nutrients is an integral part of a cell's physiology. Using analytical
chemistry techniques, metabolite uptake and excretion from the culture medium can be …

Time-resolved metabolic footprinting for nonlinear modeling of bacterial substrate utilization

V Behrends, TMD Ebbels, HD Williams… - Applied and …, 2009 - Am Soc Microbiol
Untargeted profiling of small-molecule metabolites from microbial culture supernatants
(metabolic footprinting) has great potential as a phenotyping tool. We used time-resolved …

High‐throughput dilution‐based growth method enables time‐resolved exo‐metabolomics of Pseudomonas putida and Pseudomonas aeruginosa

BH Pedersen, N Gurdo, HK Johansen… - Microbial …, 2021 - Wiley Online Library
Understanding metabolism is fundamental to access and harness bacterial physiology. In
most bacteria, nutrient utilization is hierarchically optimized according to their energetic …

Metabolic footprinting in microbiology: methods and applications in functional genomics and biotechnology

V Mapelli, L Olsson, J Nielsen - Trends in biotechnology, 2008 - cell.com
Metabolomics embraces several strategies that aim to quantify cell metabolites in order to
increase our understanding of how metabolite levels and interactions influence phenotypes …

Optimization of metabolite extraction protocols for the identification and profiling of small molecule metabolites from planktonic and biofilm Pseudomonas aeruginosa …

A Fuchs, BP Tripet, CB Ammons… - Current …, 2016 - ingentaconnect.com
Background: Metabolomics aims to characterize the metabolic phenotype and metabolic
pathways utilized by microorganisms or other cellular systems. A crucial component to …

Metabolic fingerprinting of bacteria by fluorescence lifetime imaging microscopy

A Bhattacharjee, R Datta, E Gratton, AI Hochbaum - Scientific reports, 2017 - nature.com
Bacterial populations exhibit a range of metabolic states influenced by their environment,
intra-and interspecies interactions. The identification of bacterial metabolic states and …

Visualization of mRNA expression in Pseudomonas aeruginosa aggregates reveals spatial patterns of fermentative and denitrifying metabolism

J Livingston, MA Spero, ZR Lonergan… - Applied and …, 2022 - Am Soc Microbiol
Gaining insight into the behavior of bacteria at the single-cell level is important given that
heterogeneous microenvironments strongly influence microbial physiology. The …

Staring into the void: demystifying microbial metabolomics

CM Grim, GT Luu, LM Sanchez - FEMS microbiology letters, 2019 - academic.oup.com
Metabolites give us a window into the chemistry of microbes and are split into two
subclasses: primary and secondary. Primary metabolites are required for life whereas …

NMR Metabolomics of Planktonic and Biofilm Modes of Growth in Pseudomonas aeruginosa

EL Gjersing, JL Herberg, J Horn… - Analytical …, 2007 - ACS Publications
Bacteria often reside in communities where the cells have secreted sticky, polymeric
compounds that allow them to attach to surfaces. This sessile lifestyle, referred to as a …

How Pseudomonas aeruginosa adapts to various environments: a metabolomic approach

E Frimmersdorf, S Horatzek… - Environmental …, 2010 - Wiley Online Library
In addition to transcriptome and proteome studies, metabolome analysis represents a third
complementary approach to identify metabolic pathways and adaptation processes. In order …