Disparate proteome reactivity profiles of carbon electrophiles

E Weerapana, GM Simon, BF Cravatt - Nature chemical biology, 2008 - nature.com
Insights into the proteome reactivity of electrophiles are crucial for designing activity-based
probes for enzymes lacking cognate affinity labels. Here, we show that different classes of …

Covalent protein modification: the current landscape of residue-specific electrophiles

DA Shannon, E Weerapana - Current opinion in chemical biology, 2015 - Elsevier
Highlights•Electrophiles can show distinct amino-acid selectivities in proteomes.•The
judicious selection of an electrophile is critical to various chemical-proteomic applications.•A …

Investigating the proteome reactivity and selectivity of aryl halides

DA Shannon, R Banerjee, ER Webster… - Journal of the …, 2014 - ACS Publications
Protein-reactive electrophiles are critical to chemical proteomic applications including
activity-based protein profiling, site-selective protein modification, and covalent inhibitor …

Profiling the proteome-wide selectivity of diverse electrophiles

PRA Zanon, F Yu, P Musacchio, L Lewald, M Zollo… - 2021 - chemrxiv.org
Targeted covalent inhibitors are powerful entities in drug discovery, but their application has
so far mainly been limited to addressing cysteine residues. The development of cysteine …

Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries

M Kuljanin, DC Mitchell, DK Schweppe… - Nature …, 2021 - nature.com
Current methods used for measuring amino acid side-chain reactivity lack the throughput
needed to screen large chemical libraries for interactions across the proteome. Here we …

Multi-tiered chemical proteomic maps of tryptoline acrylamide–protein interactions in cancer cells

E Njomen, RE Hayward, KE DeMeester… - Nature Chemistry, 2024 - nature.com
Covalent chemistry is a versatile approach for expanding the ligandability of the human
proteome. Activity-based protein profiling (ABPP) can infer the specific residues modified by …

Chemoproteomic profiling and discovery of protein electrophiles in human cells

ML Matthews, L He, BD Horning, EJ Olson… - Nature …, 2017 - nature.com
Activity-based protein profiling (ABPP) serves as a chemical proteomic platform to discover
and characterize functional amino acids in proteins on the basis of their enhanced reactivity …

Global profiling of lysine reactivity and ligandability in the human proteome

SM Hacker, KM Backus, MR Lazear, S Forli… - Nature …, 2017 - nature.com
Nucleophilic amino acids make important contributions to protein function, including
performing key roles in catalysis and serving as sites for post-translational modification …

Click chemistry in proteomic investigations

CG Parker, MR Pratt - Cell, 2020 - cell.com
Despite advances in genetic and proteomic techniques, a complete portrait of the proteome
and its complement of dynamic interactions and modifications remains a lofty, and as of yet …

Tunable Amine‐Reactive Electrophiles for Selective Profiling of Lysine

KC Tang, J Cao, LM Boatner, L Li… - Angewandte Chemie …, 2022 - Wiley Online Library
Proteome profiling by activated esters identified> 9000 ligandable lysines but they are
limited as covalent inhibitors due to poor hydrolytic stability. Here we report our efforts to …