Heritable temporal gene expression patterns correlate with metabolomic seed content in developing hexaploid oat seed

H Hu, JJ Gutierrez‐Gonzalez, X Liu… - Plant Biotechnology …, 2020 - Wiley Online Library
Oat ranks sixth in world cereal production and has a higher content of health‐promoting
compounds compared with other cereals. However, there is neither a robust oat reference …

Making the most of 'omics' for crop breeding

P Langridge, D Fleury - Trends in biotechnology, 2011 - cell.com
Adoption of new breeding technologies is likely to underpin future gains in crop productivity.
The rapid advances in 'omics' technologies provide an opportunity to generate new datasets …

Integration of omics approaches to understand oil/protein content during seed development in oilseed crops

M Gupta, PB Bhaskar, S Sriram, PH Wang - Plant cell reports, 2017 - Springer
Oilseed crops, especially soybean (Glycine max) and canola/rapeseed (Brassica napus),
produce seeds that are rich in both proteins and oils and that are major sources of energy …

Next-generation sequencing from bulked-segregant analysis accelerates the simultaneous identification of two qualitative genes in soybean

J Song, Z Li, Z Liu, Y Guo, LJ Qiu - Frontiers in plant science, 2017 - frontiersin.org
Next-generation sequencing (NGS)-based bulked-segregant analysis (BSA) approaches
have been proven successful for rapidly mapping genes in plant species. However, most …

SoyXpress: a database for exploring the soybean transcriptome

KCC Cheng, MV Strömvik - BMC genomics, 2008 - Springer
Background Experiments using whole transcriptome microarrays produce massive amounts
of data. To gain a comprehensive understanding of this gene expression data it needs to be …

Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology

RE Oliver, GR Lazo, JD Lutz, MJ Rubenfield, NA Tinker… - BMC genomics, 2011 - Springer
Background Genetic markers are pivotal to modern genomics research; however, discovery
and genotyping of molecular markers in oat has been hindered by the size and complexity of …

MODMS: a multi-omics database for facilitating biological studies on alfalfa (Medicago sativa L.)

L Fang, T Liu, M Li, XM Dong, Y Han, C Xu… - Horticulture …, 2024 - academic.oup.com
Alfalfa (Medicago sativa L.) is a globally important forage crop. It also serves as a vegetable
and medicinal herb because of its excellent nutritional quality and significant economic …

WheatCENet: a database for comparative co-expression networks analysis of allohexaploid wheat and its progenitors

Z Li, Y Hu, X Ma, L Da, J She, Y Liu, X Yi… - Genomics …, 2023 - academic.oup.com
Genetic and epigenetic changes after polyploidization events could result in variable gene
expression and modified regulatory networks. Here, using large-scale transcriptome data …

Applications of multi-omics technologies for crop improvement

Y Yang, MA Saand, L Huang, WB Abdelaal… - Frontiers in Plant …, 2021 - frontiersin.org
Multiple “omics” approaches have emerged as successful technologies for plant systems
over the last few decades. Advances in next-generation sequencing (NGS) have paved a …

Mining candidate genes underlying seed oil content using BSA-seq in soybean

S Zhang, AM Abdelghany, M Azam, J Qi, J Li… - Industrial Crops and …, 2023 - Elsevier
Attempts to alter seed oil content in soybean have been hampered by the complicated
genetic architecture as being controlled by multiple genes. In order to investigate the genetic …