Maize pan-transcriptome provides novel insights into genome complexity and quantitative trait variation

M Jin, H Liu, C He, J Fu, Y Xiao, Y Wang, W Xie… - Scientific reports, 2016 - nature.com
Gene expression variation largely contributes to phenotypic diversity and constructing pan-
transcriptome is considered necessary for species with complex genomes. However, the …

Development of a versatile resource for post-genomic research through consolidating and characterizing 1500 diverse wild and cultivated soybean genomes

H Zhang, H Jiang, Z Hu, Q Song, YC An - BMC genomics, 2022 - Springer
Background With advances in next-generation sequencing technologies, an unprecedented
amount of soybean accessions has been sequenced by many individual studies and made …

Integrating omic approaches for abiotic stress tolerance in soybean

R Deshmukh, H Sonah, G Patil, W Chen… - Frontiers in Plant …, 2014 - frontiersin.org
Soybean production is greatly influenced by abiotic stresses imposed by environmental
factors such as drought, water submergence, salt, and heavy metals. A thorough …

Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences

CH Deng, S Naithani, S Kumari, I Cobo-Simón… - Database, 2023 - academic.oup.com
Large-scale genotype and phenotype data have been increasingly generated to identify
genetic markers, understand gene function and evolution and facilitate genomic selection …

Using genomic information to improve soybean adaptability to climate change

MW Li, D Xin, Y Gao, KP Li, K Fan… - Journal of …, 2017 - academic.oup.com
Climate change has brought severe challenges to agriculture. It is anticipated that there will
be a drop in crop yield–including that of soybean–due to climatic stress factors that include …

Identification and characterization of large DNA deletions affecting oil quality traits in soybean seeds through transcriptome sequencing analysis

W Goettel, M Ramirez, RG Upchurch, YC An - Theoretical and Applied …, 2016 - Springer
Key message Identification and characterization of a 254-kb genomic deletion on a
duplicated chromosome segment that resulted in a low level of palmitic acid in soybean …

Prediction and association mapping of agronomic traits in maize using multiple omic data

Y Xu, C Xu, S Xu - Heredity, 2017 - nature.com
Genomic selection holds a great promise to accelerate plant breeding via early selection
before phenotypes are measured, and it offers major advantages over marker-assisted …

Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding

T Joshi, MR Fitzpatrick, S Chen, Y Liu… - Nucleic acids …, 2014 - academic.oup.com
Abstract Soybean Knowledge Base (http://soykb. org) is a comprehensive web resource
developed for bridging soybean translational genomics and molecular breeding research. It …

A genome-wide association study of seed composition traits in wild soybean (Glycine soja)

LJ Leamy, H Zhang, C Li, CY Chen, BH Song - BMC genomics, 2017 - Springer
Abstract Background Cultivated soybean (Glycine max) is a major agricultural crop that
provides a crucial source of edible protein and oil. Decreased amounts of saturated palmitic …

Analysis of Spatio-Temporal Transcriptome Profiles of Soybean (Glycine max) Tissues during Early Seed Development

S Sun, C Yi, J Ma, S Wang, M Peirats-Llobet… - International Journal of …, 2020 - mdpi.com
Soybean (Glycine max) is an important crop providing oil and protein for both human and
animal consumption. Knowing which biological processes take place in specific tissues in a …