[PDF][PDF] WheatOmics: A platform combining multiple omics data to accelerate functional genomics studies in wheat

S Ma, M Wang, J Wu, W Guo, Y Chen, G Li, Y Wang… - Molecular plant, 2021 - cell.com
Mold-breaking progress in whole-genome sequencing and rapid accumulation of multi-
omics data have revolutionized the research strategies of functional genomics in wheat …

[HTML][HTML] Genome-wide detection of major and epistatic effect QTLs for seed protein and oil content in soybean under multiple environments using high-density bin map

B Karikari, S Li, JA Bhat, Y Cao, J Kong, J Yang… - International journal of …, 2019 - mdpi.com
Seed protein and oil content are the two important traits determining the quality and value of
soybean. Development of improved cultivars requires detailed understanding of the genetic …

[HTML][HTML] Deciphering Pleiotropic Signatures of Regulatory SNPs in Zea mays L. Using Multi-Omics Data and Machine Learning Algorithms

A Haleem, S Klees, AO Schmitt, M Gültas - International Journal of …, 2022 - mdpi.com
Maize is one of the most widely grown cereals in the world. However, to address the
challenges in maize breeding arising from climatic anomalies, there is a need for developing …

Understandings and future challenges in soybean functional genomics and molecular breeding

H Du, C Fang, Y Li, F Kong, B Liu - Journal of Integrative Plant …, 2023 - Wiley Online Library
Soybean (Glycine max) is a major source of plant protein and oil. Soybean breeding has
benefited from advances in functional genomics. In particular, the release of soybean …

Charting plant gene functions in the multi-omics and single-cell era

T Depuydt, B De Rybel, K Vandepoele - Trends in Plant Science, 2023 - cell.com
Despite the increased access to high-quality plant genome sequences, the set of genes with
a known function remains far from complete. With the advent of novel bulk and single-cell …

[HTML][HTML] Current progress, applications and challenges of multi-omics approaches in sesame genetic improvement

H Li, M Tahir ul Qamar, L Yang, J Liang, J You… - International Journal of …, 2023 - mdpi.com
Sesame is one of the important traditional oil crops in the world, and has high economic and
nutritional value. Recently, due to the novel high throughput sequencing techniques and …

CropGS-Hub: a comprehensive database of genotype and phenotype resources for genomic prediction in major crops

J Chen, C Tan, M Zhu, C Zhang, Z Wang… - Nucleic Acids …, 2024 - academic.oup.com
The explosive amount of multi-omics data has brought a paradigm shift both in academic
research and further application in life science. However, managing and reusing the …

Advances in omics and bioinformatics tools for systems analyses of plant functions

K Mochida, K Shinozaki - Plant and Cell Physiology, 2011 - academic.oup.com
Omics and bioinformatics are essential to understanding the molecular systems that underlie
various plant functions. Recent game-changing sequencing technologies have revitalized …

[HTML][HTML] Genomic features of open chromatin regions (OCRs) in wild soybean and their effects on gene expressions

MK Huang, L Zhang, LM Zhou, WS Yung, MW Li… - Genes, 2021 - mdpi.com
Transcription activation is tightly associated with the openness of chromatin, which allows
direct contact between transcriptional regulators, such as transcription factors, and their …

Development of SNP genotyping assays for seed composition traits in soybean

G Patil, J Chaudhary, TD Vuong… - … Journal of Plant …, 2017 - Wiley Online Library
Seed composition is one of the most important determinants of the economic values in
soybean. The quality and quantity of different seed components, such as oil, protein, and …